Variant report

Variant	rs1524303
Chromosome Location	chr3:22676609-22676610
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11717157	0.99[EUR][1000 genomes]
rs1303790	0.87[ASN][1000 genomes]
rs1303791	0.87[ASN][1000 genomes]
rs1349284	0.93[EUR][1000 genomes]
rs1375829	0.98[EUR][1000 genomes]
rs1459523	0.98[EUR][1000 genomes]
rs1524304	1.00[EUR][1000 genomes]
rs1524306	0.99[EUR][1000 genomes]
rs1524310	0.98[EUR][1000 genomes]
rs1818884	0.83[ASN][1000 genomes]
rs1851834	0.83[ASN][1000 genomes]
rs1916922	0.98[EUR][1000 genomes]
rs2066972	0.84[ASN][1000 genomes]
rs2358925	0.99[EUR][1000 genomes]
rs4858427	0.87[ASN][1000 genomes]
rs4858428	0.86[ASN][1000 genomes]
rs4858430	0.87[ASN][1000 genomes]
rs4858431	0.87[ASN][1000 genomes]
rs60139731	0.84[ASN][1000 genomes]
rs6550705	1.00[EUR][1000 genomes]
rs6769864	0.95[EUR][1000 genomes]
rs6781670	0.98[EUR][1000 genomes]
rs6786431	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6788923	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6797574	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6803466	0.87[ASN][1000 genomes]
rs6803792	0.98[EUR][1000 genomes]
rs6806040	0.87[ASN][1000 genomes]
rs6806043	0.96[EUR][1000 genomes]
rs7636620	0.90[ASN][1000 genomes]
rs9310699	0.95[EUR][1000 genomes]
rs9310701	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9817471	0.93[EUR][1000 genomes]
rs9819583	0.93[EUR][1000 genomes]
rs987296	0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460477	chr3:22532660-22920246	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv589941	chr3:22532660-22920246	Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1014828	chr3:22554271-23033498	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1012343	chr3:22560733-22811382	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv589946	chr3:22600086-22865347	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1007224	chr3:22612682-22809139	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv536522	chr3:22612682-22809139	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv1011446	chr3:22612682-22864885	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv1010220	chr3:22644920-22728769	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1524303	NAAA	trans	lymphoblastoid	seeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:22669400-22679200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:22675200-22677000	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr3:22676600-22677000	Enhancers	H1 Cell Line	embryonic stem cell

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