Variant report

Variant	rs60139731
Chromosome Location	chr3:22726826-22726827
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:22605347..22606025-chr3:22726006..22726863,2	MCF-7	breast:
2	chr3:22605258..22606015-chr3:22726589..22727722,7	MCF-7	breast:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1159615	0.96[EUR][1000 genomes]
rs1303790	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1303791	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1380365	0.93[EUR][1000 genomes]
rs1459520	0.93[EUR][1000 genomes]
rs1520842	0.91[EUR][1000 genomes]
rs1524302	0.98[EUR][1000 genomes]
rs1524303	0.84[ASN][1000 genomes]
rs1524318	0.94[EUR][1000 genomes]
rs1524319	0.91[EUR][1000 genomes]
rs1524320	0.91[EUR][1000 genomes]
rs1818884	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1851834	0.85[ASN][1000 genomes]
rs2066972	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4858048	0.98[EUR][1000 genomes]
rs4858426	0.96[EUR][1000 genomes]
rs4858427	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4858428	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4858430	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4858431	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6550710	0.90[EUR][1000 genomes]
rs6550711	0.89[EUR][1000 genomes]
rs6786431	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6788923	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs67912759	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6797574	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6803466	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6806040	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7609901	0.89[EUR][1000 genomes]
rs9310701	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9756878	0.86[EUR][1000 genomes]
rs9810200	0.93[EUR][1000 genomes]
rs9812904	0.82[EUR][1000 genomes]
rs9834251	0.95[EUR][1000 genomes]
rs9844346	0.93[EUR][1000 genomes]
rs9847981	0.92[EUR][1000 genomes]
rs9853385	0.96[EUR][1000 genomes]
rs9861855	0.87[EUR][1000 genomes]
rs9868624	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460477	chr3:22532660-22920246	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv589941	chr3:22532660-22920246	Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1014828	chr3:22554271-23033498	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1012343	chr3:22560733-22811382	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv589946	chr3:22600086-22865347	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1007224	chr3:22612682-22809139	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv536522	chr3:22612682-22809139	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv1011446	chr3:22612682-22864885	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv1010220	chr3:22644920-22728769	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	esv1837373	chr3:22723578-22737463	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:22725800-22727000	Enhancers	Fetal Stomach	stomach
2	chr3:22726200-22727200	Enhancers	Rectal Smooth Muscle	rectum
3	chr3:22726600-22727000	Enhancers	Stomach Smooth Muscle	stomach
4	chr3:22726800-22727400	Enhancers	Colon Smooth Muscle	Colon

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