Variant report
Variant | rs1525227 |
---|---|
Chromosome Location | chr7:147066773-147066774 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr7:147065836..147067829-chr7:147068950..147071013,2 | MCF-7 | breast: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10500179 | 0.95[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs13233234 | 0.80[EUR][1000 genomes] |
rs13247289 | 0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs13247402 | 0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2204412 | 0.88[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs34459574 | 0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs35594861 | 0.89[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs35609387 | 0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs67361115 | 0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs73473166 | 0.91[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs7781303 | 0.89[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs7785125 | 0.89[AMR][1000 genomes];0.97[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv933033 | chr7:146720301-147081560 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 5 gene(s) | inside rSNPs | diseases |
2 | nsv1033898 | chr7:146721499-147081768 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 5 gene(s) | inside rSNPs | diseases |
3 | nsv931005 | chr7:146730472-147381257 | Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 7 gene(s) | inside rSNPs | diseases |
4 | nsv1033398 | chr7:146989035-147101573 | Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionmiRNA | 1 gene(s) | inside rSNPs | n/a |
5 | nsv465192 | chr7:147001077-147086045 | Enhancers Weak transcription | TF binding regionCpG islandChromatin interactive regionmiRNA | 1 gene(s) | inside rSNPs | n/a |
6 | nsv608943 | chr7:147001077-147086045 | Weak transcription Enhancers | TF binding regionCpG islandChromatin interactive regionmiRNA | 1 gene(s) | inside rSNPs | n/a |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr7:147065800-147066800 | Enhancers | iPS-20b Cell Line | embryonic stem cell |