Variant report

Variant	rs13247289
Chromosome Location	chr7:147061667-147061668
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:147045457..147047946-chr7:147059907..147061995,2	K562	blood:

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10500179	0.91[CEU][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10500185	0.82[CEU][hapmap]
rs10500187	0.82[CEU][hapmap]
rs11764538	0.82[CEU][hapmap]
rs11769736	1.00[CEU][hapmap]
rs11771144	0.87[CEU][hapmap]
rs11772135	0.82[CEU][hapmap]
rs11773683	0.84[CEU][hapmap]
rs12703911	0.82[CEU][hapmap]
rs12703916	0.82[CEU][hapmap]
rs13221003	0.95[CEU][hapmap]
rs13221396	0.86[CEU][hapmap]
rs13221977	0.82[CEU][hapmap]
rs13222223	0.87[CEU][hapmap]
rs13224292	0.95[CEU][hapmap]
rs13224673	0.86[CEU][hapmap]
rs13227072	0.95[CEU][hapmap]
rs13227291	0.85[CEU][hapmap]
rs13229651	0.87[CEU][hapmap]
rs13231991	0.86[CEU][hapmap]
rs13233234	0.86[CEU][hapmap];0.82[AMR][1000 genomes]
rs13234757	0.86[CEU][hapmap]
rs13235593	0.81[CEU][hapmap]
rs13236876	0.90[CEU][hapmap]
rs13238470	0.87[CEU][hapmap]
rs13242678	0.87[CEU][hapmap]
rs13246604	0.82[CEU][hapmap]
rs13246788	0.80[CEU][hapmap]
rs13247132	0.84[CEU][hapmap]
rs13247402	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1357896	1.00[CEU][hapmap]
rs1404711	0.94[CEU][hapmap]
rs1406288	0.86[CEU][hapmap]
rs1525227	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17223460	0.82[CEU][hapmap]
rs17412444	0.95[CEU][hapmap]
rs17413110	1.00[CEU][hapmap]
rs17497254	0.95[CEU][hapmap]
rs17497557	1.00[CEU][hapmap]
rs1842273	0.87[CEU][hapmap]
rs1871492	0.82[CEU][hapmap]
rs2046052	0.82[CEU][hapmap]
rs2204412	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2373031	0.87[CEU][hapmap]
rs2373128	0.82[CEU][hapmap]
rs34459574	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35594861	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35609387	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5028055	0.87[CEU][hapmap]
rs67361115	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6951143	0.87[CEU][hapmap]
rs6979164	0.82[CEU][hapmap]
rs73473166	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs747138	0.82[CEU][hapmap]
rs7779279	0.95[CEU][hapmap]
rs7781303	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7781464	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7785125	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7798078	1.00[CEU][hapmap]
rs7798162	1.00[CEU][hapmap]
rs7810103	1.00[CEU][hapmap]
rs957484	0.86[CEU][hapmap]
rs997223	0.86[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933033	chr7:146720301-147081560	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1033898	chr7:146721499-147081768	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1033398	chr7:146989035-147101573	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	n/a
5	nsv465192	chr7:147001077-147086045	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	n/a
6	nsv608943	chr7:147001077-147086045	Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147059600-147062200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links