Variant report

Variant	rs13242678
Chromosome Location	chr7:147110561-147110562
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10500175	1.00[CHB][hapmap]
rs10500185	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10500187	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11764538	0.96[CEU][hapmap];1.00[CHB][hapmap];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11769736	0.81[CEU][hapmap]
rs11770339	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11771144	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11772135	0.96[CEU][hapmap];1.00[CHB][hapmap]
rs11773547	1.00[CHB][hapmap]
rs11773683	0.95[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12703911	0.96[CEU][hapmap];1.00[CHB][hapmap]
rs12703916	0.96[CEU][hapmap];1.00[CHB][hapmap]
rs12703921	1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12703922	0.87[CEU][hapmap];1.00[CHB][hapmap]
rs13221003	0.81[CEU][hapmap]
rs13221396	1.00[CEU][hapmap]
rs13221977	0.96[CEU][hapmap];1.00[CHB][hapmap]
rs13222223	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13223092	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13224673	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs13227291	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs13229651	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs13231364	0.88[CEU][hapmap];1.00[CHB][hapmap]
rs13231991	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13233234	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13234094	1.00[CHB][hapmap]
rs13234757	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs13235407	1.00[CHB][hapmap]
rs13235593	0.96[CEU][hapmap];1.00[CHB][hapmap];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13238470	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs13241063	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13243643	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13246604	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13246788	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs13247132	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13247289	0.87[CEU][hapmap]
rs1357896	1.00[CHB][hapmap]
rs1404711	1.00[CHB][hapmap]
rs1406288	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1528520	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17223460	0.96[CEU][hapmap];1.00[CHB][hapmap]
rs17224658	0.88[CEU][hapmap];1.00[CHB][hapmap]
rs17413110	0.81[CEU][hapmap]
rs17498276	1.00[CHB][hapmap]
rs1842273	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1842274	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1871492	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2046052	0.96[CEU][hapmap];1.00[CHB][hapmap]
rs2204412	0.81[CEU][hapmap]
rs2373031	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2373128	0.96[CEU][hapmap];1.00[CHB][hapmap]
rs2373129	0.91[CEU][hapmap];1.00[CHB][hapmap]
rs34163397	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34959888	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34993596	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35288063	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35696201	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35756055	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35894873	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35894927	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36103173	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5028055	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs6951143	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs6957443	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6979164	0.96[CEU][hapmap];1.00[CHB][hapmap]
rs71530784	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs747138	0.96[CEU][hapmap];1.00[CHB][hapmap]
rs7781464	0.83[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7798078	0.81[CEU][hapmap]
rs7798162	0.81[CEU][hapmap]
rs7810103	0.81[CEU][hapmap];1.00[CHB][hapmap]
rs872714	0.94[CEU][hapmap]
rs957484	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs997223	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv608954	chr7:147104887-147145576	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
3	nsv1024540	chr7:147105149-147138125	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147095400-147120800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:147107800-147111400	Enhancers	Osteobl	bone
3	chr7:147108000-147111200	Enhancers	Adipose Nuclei	Adipose
4	chr7:147108400-147111000	Enhancers	Fetal Lung	lung
5	chr7:147108800-147111000	Enhancers	Placenta Amnion	Placenta Amnion
6	chr7:147108800-147111200	Enhancers	Fetal Stomach	stomach
7	chr7:147109200-147111000	Enhancers	HMEC	breast
8	chr7:147109200-147111400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr7:147109200-147111400	Enhancers	Fetal Muscle Leg	muscle
10	chr7:147109400-147110800	Enhancers	NH-A	brain
11	chr7:147109600-147110600	Weak transcription	Fetal Muscle Trunk	muscle
12	chr7:147109600-147110800	Weak transcription	Ovary	ovary
13	chr7:147109800-147111200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr7:147110000-147110600	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr7:147110000-147110800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr7:147110000-147110800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr7:147110200-147110600	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr7:147110200-147110600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr7:147110200-147110600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
20	chr7:147110200-147110600	Flanking Active TSS	HSMM	muscle
21	chr7:147110200-147110600	Flanking Active TSS	HSMMtube	muscle
22	chr7:147110200-147111000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr7:147110200-147111400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr7:147110200-147111400	Enhancers	Placenta	Placenta
25	chr7:147110400-147110600	Flanking Active TSS	NHDF-Ad	bronchial
26	chr7:147110400-147110800	Enhancers	Fetal Kidney	kidney
27	chr7:147110400-147111000	Flanking Active TSS	NHLF	lung

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