Variant report

Variant	rs7781464
Chromosome Location	chr7:147052234-147052235
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10500175	1.00[CHB][hapmap]
rs10500185	1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10500187	1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11764538	1.00[CHB][hapmap];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11770339	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11771144	0.83[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11772135	1.00[CHB][hapmap]
rs11773547	1.00[CHB][hapmap]
rs11773683	0.80[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12703911	1.00[CHB][hapmap]
rs12703916	1.00[CHB][hapmap]
rs12703921	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12703922	1.00[CHB][hapmap]
rs13221396	0.81[CEU][hapmap]
rs13221977	1.00[CHB][hapmap]
rs13222223	0.83[CEU][hapmap];1.00[CHB][hapmap];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13223092	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13224673	0.83[CEU][hapmap];1.00[CHB][hapmap]
rs13227291	0.93[CEU][hapmap];1.00[CHB][hapmap]
rs13229651	0.83[CEU][hapmap];1.00[CHB][hapmap]
rs13231364	1.00[CHB][hapmap]
rs13231991	0.83[CEU][hapmap];1.00[CHB][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13233234	0.83[CEU][hapmap];1.00[CHB][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13234094	1.00[CHB][hapmap]
rs13234757	0.83[CEU][hapmap];1.00[CHB][hapmap]
rs13235407	1.00[CHB][hapmap]
rs13235593	1.00[CHB][hapmap];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13238470	0.83[CEU][hapmap];1.00[CHB][hapmap]
rs13241063	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13242678	0.83[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13243643	0.90[EUR][1000 genomes]
rs13246604	1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13246788	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs13247132	1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13247289	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13247402	0.80[EUR][1000 genomes]
rs1357896	1.00[CHB][hapmap]
rs1404711	1.00[CHB][hapmap]
rs1406288	0.83[CEU][hapmap];1.00[CHB][hapmap];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1528520	1.00[ASN][1000 genomes]
rs17223460	1.00[CHB][hapmap]
rs17224658	1.00[CHB][hapmap]
rs17498276	1.00[CHB][hapmap]
rs1842273	0.83[CEU][hapmap];1.00[CHB][hapmap];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1842274	1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1871492	1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2046052	1.00[CHB][hapmap]
rs2204412	0.81[AMR][1000 genomes]
rs2373031	0.83[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2373128	1.00[CHB][hapmap]
rs2373129	1.00[CHB][hapmap]
rs34163397	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34959888	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34993596	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35288063	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35594861	0.83[AMR][1000 genomes]
rs35696201	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35756055	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35894873	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35894927	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36103173	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5028055	0.83[CEU][hapmap];1.00[CHB][hapmap]
rs6951143	0.83[CEU][hapmap];1.00[CHB][hapmap]
rs6957443	1.00[ASN][1000 genomes]
rs6979164	1.00[CHB][hapmap]
rs71530784	0.91[EUR][1000 genomes]
rs73473166	0.82[AMR][1000 genomes]
rs747138	1.00[CHB][hapmap]
rs7781303	0.83[AMR][1000 genomes]
rs7785125	0.83[AMR][1000 genomes]
rs7810103	1.00[CHB][hapmap]
rs957484	0.83[CEU][hapmap];1.00[CHB][hapmap]
rs997223	0.81[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933033	chr7:146720301-147081560	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1033898	chr7:146721499-147081768	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1033398	chr7:146989035-147101573	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	n/a
5	nsv465192	chr7:147001077-147086045	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	n/a
6	nsv608943	chr7:147001077-147086045	Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	n/a
7	nsv526693	chr7:147011388-147054250	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
8	nsv1018715	chr7:147012067-147052280	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147052200-147055800	Weak transcription	Brain Hippocampus Middle	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links