Variant report

Variant	rs13221396
Chromosome Location	chr7:147149788-147149789
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10500185	1.00[CEU][hapmap];0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10500187	1.00[CEU][hapmap];0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11764538	1.00[CEU][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11769736	0.83[CEU][hapmap]
rs11770339	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11771144	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11772135	1.00[CEU][hapmap]
rs11773683	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12703909	0.86[CEU][hapmap]
rs12703911	1.00[CEU][hapmap]
rs12703916	1.00[CEU][hapmap]
rs12703921	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12703922	0.90[CEU][hapmap]
rs13221977	1.00[CEU][hapmap]
rs13222223	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13223092	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13224673	1.00[CEU][hapmap]
rs13227291	1.00[CEU][hapmap]
rs13229651	1.00[CEU][hapmap]
rs13231364	0.87[CEU][hapmap]
rs13231991	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13233234	1.00[CEU][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13234757	1.00[CEU][hapmap]
rs13235593	1.00[CEU][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13238470	1.00[CEU][hapmap]
rs13241063	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13242678	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13243643	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13246604	0.95[CEU][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13246788	1.00[CEU][hapmap]
rs13247132	0.95[CEU][hapmap];0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13247289	0.86[CEU][hapmap]
rs1406288	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1528520	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17223460	1.00[CEU][hapmap]
rs17224658	0.91[CEU][hapmap]
rs17413110	0.82[CEU][hapmap]
rs17497254	0.81[CEU][hapmap]
rs17497557	0.82[CEU][hapmap]
rs1842273	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1842274	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1871492	1.00[CEU][hapmap];0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2046052	1.00[CEU][hapmap]
rs2204412	0.83[CEU][hapmap]
rs2373031	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2373128	1.00[CEU][hapmap]
rs2373129	0.95[CEU][hapmap]
rs34163397	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34959888	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34993596	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35288063	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35696201	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35756055	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35894873	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35894927	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36103173	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5028055	1.00[CEU][hapmap]
rs6951143	1.00[CEU][hapmap]
rs6957443	1.00[ASN][1000 genomes]
rs6979164	0.95[CEU][hapmap]
rs71530784	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs747138	0.95[CEU][hapmap]
rs7779279	0.81[CEU][hapmap]
rs7781464	0.81[CEU][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7798078	0.83[CEU][hapmap]
rs7798162	0.83[CEU][hapmap]
rs7810103	0.83[CEU][hapmap]
rs872714	1.00[CEU][hapmap]
rs957484	1.00[CEU][hapmap]
rs997223	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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