Variant report

Variant	rs12703909
Chromosome Location	chr7:147148456-147148457
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10500185	0.84[CEU][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10500187	0.84[CEU][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11764538	0.84[CEU][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11770339	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11771144	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11772135	0.84[CEU][hapmap]
rs11773683	0.90[CEU][hapmap];0.87[EUR][1000 genomes]
rs12703911	0.84[CEU][hapmap]
rs12703916	0.84[CEU][hapmap]
rs12703921	1.00[AFR][1000 genomes]
rs13221396	0.86[CEU][hapmap]
rs13221977	0.84[CEU][hapmap]
rs13222223	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13223092	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13227291	0.81[CEU][hapmap]
rs13231991	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13233234	0.80[EUR][1000 genomes]
rs13235593	0.91[CEU][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13241063	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13242678	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13243643	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs13246604	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13247132	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1406288	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1528520	1.00[AFR][1000 genomes]
rs17223460	0.84[CEU][hapmap]
rs1842273	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1842274	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1871492	0.84[CEU][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2046052	0.84[CEU][hapmap]
rs2373031	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2373128	0.84[CEU][hapmap]
rs2373129	0.82[CEU][hapmap]
rs34163397	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34959888	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34993596	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35288063	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35696201	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35756055	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35894873	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35894927	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs36103173	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6957443	1.00[AFR][1000 genomes]
rs71530784	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs872714	0.89[CEU][hapmap]
rs997223	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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