Variant report

Variant	rs7779279
Chromosome Location	chr7:147067588-147067589
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:147065836..147067829-chr7:147068950..147071013,2	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10500179	0.86[CEU][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11769736	0.95[CEU][hapmap];1.00[JPT][hapmap]
rs12703921	1.00[CHB][hapmap]
rs13221003	0.91[CEU][hapmap];1.00[JPT][hapmap]
rs13221396	0.81[CEU][hapmap]
rs13224292	0.91[CEU][hapmap];1.00[JPT][hapmap]
rs13227072	0.91[CEU][hapmap];1.00[JPT][hapmap]
rs13227291	0.81[CEU][hapmap];1.00[CHB][hapmap]
rs13233234	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13236876	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs13247289	0.95[CEU][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13247402	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1357896	0.91[CEU][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap]
rs1404711	0.89[CEU][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap]
rs1525227	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17412444	0.91[CEU][hapmap];1.00[JPT][hapmap]
rs17413110	0.95[CEU][hapmap];1.00[JPT][hapmap]
rs17497254	0.90[CEU][hapmap];1.00[JPT][hapmap]
rs17497557	0.95[CEU][hapmap];1.00[JPT][hapmap]
rs2204412	0.95[CEU][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34459574	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35594861	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35609387	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67361115	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73473166	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs735261	1.00[JPT][hapmap]
rs7781303	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7781464	0.82[AMR][1000 genomes]
rs7785125	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7798078	0.95[CEU][hapmap];1.00[JPT][hapmap]
rs7798162	0.95[CEU][hapmap];1.00[JPT][hapmap]
rs7810103	0.95[CEU][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933033	chr7:146720301-147081560	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1033898	chr7:146721499-147081768	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1033398	chr7:146989035-147101573	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	n/a
5	nsv465192	chr7:147001077-147086045	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	n/a
6	nsv608943	chr7:147001077-147086045	Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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