Variant report

Variant	rs11773547
Chromosome Location	chr7:147008534-147008535
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10500175	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.87[MEX][hapmap];0.96[TSI][hapmap]
rs10500185	1.00[CHB][hapmap]
rs10500187	1.00[CHB][hapmap]
rs10952677	0.81[MEX][hapmap]
rs11763492	0.87[MEX][hapmap]
rs11764538	1.00[CHB][hapmap]
rs11771144	1.00[CHB][hapmap]
rs11772135	1.00[CHB][hapmap]
rs11773683	1.00[CHB][hapmap]
rs12703911	1.00[CHB][hapmap]
rs12703916	1.00[CHB][hapmap]
rs12703921	1.00[CHB][hapmap]
rs12703922	1.00[CHB][hapmap]
rs13221977	1.00[CHB][hapmap]
rs13222223	1.00[CHB][hapmap]
rs13223171	0.87[MEX][hapmap]
rs13224673	1.00[CHB][hapmap];0.81[MEX][hapmap]
rs13227291	1.00[CHB][hapmap]
rs13229651	1.00[CHB][hapmap]
rs13231364	1.00[CHB][hapmap]
rs13231991	1.00[CHB][hapmap]
rs13233234	1.00[CHB][hapmap];0.81[MEX][hapmap]
rs13234094	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13234757	1.00[CHB][hapmap]
rs13235407	1.00[CHB][hapmap]
rs13235593	1.00[CHB][hapmap]
rs13238470	1.00[CHB][hapmap]
rs13242678	1.00[CHB][hapmap]
rs13246604	1.00[CHB][hapmap]
rs13246788	1.00[CHB][hapmap]
rs13247132	1.00[CHB][hapmap]
rs1357896	1.00[CHB][hapmap]
rs1404711	1.00[CHB][hapmap]
rs1406288	1.00[CHB][hapmap]
rs1472361	0.87[MEX][hapmap]
rs1496544	0.81[MEX][hapmap]
rs17223460	1.00[CHB][hapmap]
rs17224658	1.00[CHB][hapmap]
rs17498276	1.00[CHB][hapmap]
rs1842273	1.00[CHB][hapmap]
rs1842274	1.00[CHB][hapmap]
rs1871492	1.00[CHB][hapmap]
rs2046052	1.00[CHB][hapmap]
rs2373031	1.00[CHB][hapmap]
rs2373128	1.00[CHB][hapmap]
rs2373129	1.00[CHB][hapmap]
rs5028055	1.00[CHB][hapmap]
rs6951143	1.00[CHB][hapmap]
rs6979164	1.00[CHB][hapmap]
rs747138	1.00[CHB][hapmap]
rs7781464	1.00[CHB][hapmap]
rs7810103	1.00[CHB][hapmap]
rs957484	1.00[CHB][hapmap]
rs997223	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933033	chr7:146720301-147081560	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1033898	chr7:146721499-147081768	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
4	nsv889396	chr7:146854133-147035067	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1026360	chr7:146988190-147012081	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv1033398	chr7:146989035-147101573	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	n/a
7	nsv1029946	chr7:146993413-147021947	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
8	nsv465192	chr7:147001077-147086045	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	n/a
9	nsv608943	chr7:147001077-147086045	Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	n/a
10	esv999216	chr7:147007501-147008689	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147008000-147008800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
2	chr7:147008000-147009000	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr7:147008000-147009000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr7:147008400-147008800	Enhancers	Brain Hippocampus Middle	brain
5	chr7:147008400-147008800	Enhancers	Fetal Muscle Trunk	muscle

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