Variant report
| Variant | rs10952677 |
|---|---|
| Chromosome Location | chr7:146984423-146984424 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:36)
| rs_ID | r2[population] |
|---|---|
| rs10229762 | 1.00[JPT][hapmap] |
| rs10500174 | 1.00[JPT][hapmap] |
| rs10500175 | 1.00[CHD][hapmap];0.93[MEX][hapmap] |
| rs10500179 | 0.82[MEX][hapmap] |
| rs10500185 | 0.81[MEX][hapmap] |
| rs10500187 | 0.88[MEX][hapmap] |
| rs11763492 | 0.93[MEX][hapmap] |
| rs11772135 | 0.88[MEX][hapmap] |
| rs11773547 | 0.81[MEX][hapmap] |
| rs12111644 | 1.00[JPT][hapmap] |
| rs12111864 | 1.00[JPT][hapmap] |
| rs12112963 | 1.00[JPT][hapmap] |
| rs12703890 | 1.00[JPT][hapmap] |
| rs13223171 | 0.93[MEX][hapmap] |
| rs13224673 | 1.00[MEX][hapmap] |
| rs13233234 | 1.00[MEX][hapmap] |
| rs13241146 | 1.00[JPT][hapmap] |
| rs1357896 | 0.88[MEX][hapmap] |
| rs1406288 | 0.81[MEX][hapmap] |
| rs1472361 | 0.93[MEX][hapmap] |
| rs1496544 | 0.87[MEX][hapmap] |
| rs1525213 | 1.00[CEU][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs1603453 | 1.00[JPT][hapmap] |
| rs1603455 | 1.00[JPT][hapmap] |
| rs1603456 | 1.00[JPT][hapmap] |
| rs17170368 | 1.00[JPT][hapmap] |
| rs17170371 | 1.00[JPT][hapmap] |
| rs17409131 | 1.00[JPT][hapmap] |
| rs17412444 | 0.88[MEX][hapmap] |
| rs4726831 | 1.00[JPT][hapmap] |
| rs6464791 | 1.00[JPT][hapmap] |
| rs6943628 | 1.00[JPT][hapmap] |
| rs6977005 | 1.00[JPT][hapmap] |
| rs7777057 | 1.00[JPT][hapmap] |
| rs7798078 | 0.82[MEX][hapmap] |
| rs7806237 | 1.00[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv933033 | chr7:146720301-147081560 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv1033898 | chr7:146721499-147081768 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv931005 | chr7:146730472-147381257 | Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 7 gene(s) | inside rSNPs | diseases |
| 4 | nsv889396 | chr7:146854133-147035067 | Enhancers Weak transcription Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 5 | esv33975 | chr7:146968440-146991336 | Enhancers Active TSS Weak transcription Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs10952677 | PIP | cis | parietal | SCAN |
Chromatin state (count:0 , 50 per page) page:
| No data |
