Variant report

Variant	rs1525869
Chromosome Location	chr3:109807310-109807311
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs13070713	0.80[EUR][1000 genomes]
rs2679909	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2679913	0.86[EUR][1000 genomes]
rs775546	1.00[ASN][1000 genomes]
rs775547	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs775548	1.00[ASN][1000 genomes]
rs775550	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs775554	1.00[ASN][1000 genomes]
rs9647326	1.00[GIH][hapmap]
rs9836352	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9840277	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9874094	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9878154	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877332	chr3:109575764-110186611	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv829667	chr3:109786662-109939671	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:109803000-109811600	Weak transcription	Aorta	Aorta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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