Variant report

Variant	rs775554
Chromosome Location	chr3:109810327-109810328
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1525869	1.00[ASN][1000 genomes]
rs2679909	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs709571	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs775546	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs775547	1.00[ASN][1000 genomes]
rs775548	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs775550	1.00[ASN][1000 genomes]
rs775551	1.00[AMR][1000 genomes]
rs775552	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9836352	1.00[ASN][1000 genomes]
rs9840277	1.00[ASN][1000 genomes]
rs9874094	1.00[ASN][1000 genomes]
rs9878154	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877332	chr3:109575764-110186611	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv829667	chr3:109786662-109939671	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:109803000-109811600	Weak transcription	Aorta	Aorta
2	chr3:109808800-109812200	Weak transcription	Stomach Smooth Muscle	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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