Variant report

Variant	rs1526010
Chromosome Location	chr13:85313774-85313775
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10467662	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1526005	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1526022	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1534180	0.80[EUR][1000 genomes]
rs1547573	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1547574	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1608937	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1608938	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1917896	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2140941	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2204502	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2368303	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2692958	0.87[EUR][1000 genomes]
rs2692959	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2692962	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2692963	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2692964	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2692965	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2692966	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2692967	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2692970	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2809088	0.87[EUR][1000 genomes]
rs2949888	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2949889	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2949901	0.91[ASN][1000 genomes]
rs3013654	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3013655	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3013662	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9546872	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9602555	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949402	chr13:84675752-85606846	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv900694	chr13:85226116-85344527	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv900696	chr13:85276978-85344527	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv900697	chr13:85276978-85351625	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv900698	chr13:85276978-85374146	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv900699	chr13:85276978-85400978	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv900700	chr13:85276978-85429910	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv900701	chr13:85276978-85429910	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv900702	chr13:85276978-85605946	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv471159	chr13:85283911-85337948	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:85312800-85315400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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