Variant report

Variant	rs1534180
Chromosome Location	chr13:85385345-85385346
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10467662	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10781941	0.83[ASN][1000 genomes]
rs10871207	0.83[ASN][1000 genomes]
rs11149334	0.87[ASN][1000 genomes]
rs1526005	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1526010	0.80[EUR][1000 genomes]
rs1526022	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1547574	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1608937	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1608938	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1917896	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2091336	0.84[ASN][1000 genomes]
rs2140941	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2368313	0.84[ASN][1000 genomes]
rs2692958	0.93[EUR][1000 genomes]
rs2692959	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2692962	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2692963	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2692964	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2692965	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2692966	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2692967	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2692970	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2809088	0.93[EUR][1000 genomes]
rs2949888	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2949889	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3013654	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3013655	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3013662	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4910992	0.84[ASN][1000 genomes]
rs5009567	0.96[ASN][1000 genomes]
rs5009568	0.94[ASN][1000 genomes]
rs55997342	0.84[ASN][1000 genomes]
rs68100320	0.86[ASN][1000 genomes]
rs9546872	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9602555	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9741415	0.84[ASN][1000 genomes]
rs9743334	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949402	chr13:84675752-85606846	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv900699	chr13:85276978-85400978	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv900700	chr13:85276978-85429910	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv900701	chr13:85276978-85429910	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv900702	chr13:85276978-85605946	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv900703	chr13:85337948-85582307	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv983729	chr13:85379122-85428478	Weak transcription Enhancers Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:85384600-85385400	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr13:85384600-85385400	Enhancers	HUES64 Cell Line	embryonic stem cell

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