Variant report

Variant	rs1528129
Chromosome Location	chr11:8061966-8061967
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11821236	0.85[EUR][1000 genomes]
rs11822728	0.82[EUR][1000 genomes]
rs1881233	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1918849	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35807385	0.87[EUR][1000 genomes]
rs55642260	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs55755543	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs55953869	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56242213	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs58666270	0.87[EUR][1000 genomes]
rs59118706	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59924750	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs74052193	0.96[EUR][1000 genomes]
rs74052195	0.87[EUR][1000 genomes]
rs74052196	0.87[EUR][1000 genomes]
rs74052199	0.86[EUR][1000 genomes]
rs7941439	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052808	chr11:8011647-8129191	Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1528129	EIF3F	cis	Esophagus Mucosa	GTEx

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8058000-8067400	Weak transcription	Left Ventricle	heart
2	chr11:8060000-8062800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr11:8061200-8062200	Weak transcription	Right Ventricle	heart
4	chr11:8061200-8076200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links