Variant report

Variant	rs55755543
Chromosome Location	chr11:8064545-8064546
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11821236	0.86[EUR][1000 genomes]
rs11822728	0.83[EUR][1000 genomes]
rs1528129	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1881233	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1918849	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35807385	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs55642260	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs55953869	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56242213	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs58666270	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs59118706	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs59924750	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs74052193	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs74052195	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs74052196	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs74052199	0.87[EUR][1000 genomes]
rs7941439	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052808	chr11:8011647-8129191	Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8058000-8067400	Weak transcription	Left Ventricle	heart
2	chr11:8061200-8076200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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