Variant report

Variant	rs1529153
Chromosome Location	chr7:147920142-147920143
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12704001	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1554883	1.00[AMR][1000 genomes]
rs17170802	1.00[ASW][hapmap]
rs17170941	1.00[CEU][hapmap]
rs1881724	1.00[MEX][hapmap]
rs4509235	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs4726926	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[AFR][1000 genomes]
rs4726927	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6464858	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6975067	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428189	chr7:147885525-148051226	Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147908800-147922400	Weak transcription	Right Atrium	heart
2	chr7:147909000-147920400	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr7:147911200-147923600	Weak transcription	Fetal Brain Male	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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