Variant report

Variant	rs1531157
Chromosome Location	chr15:51990058-51990059
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:51983304..51986110-chr15:51988118..51990669,2	MCF-7	breast:
2	chr15:51981798..51984182-chr15:51989191..51992186,3	K562	blood:
3	chr15:51984106..51987260-chr15:51989301..51991929,3	MCF-7	breast:
4	chr15:51988416..51990476-chr15:51996919..51998873,2	MCF-7	breast:
5	chr15:51989352..51991086-chr15:51993502..51995016,2	K562	blood:
6	chr15:51976555..51979151-chr15:51989814..51992249,2	MCF-7	breast:
7	chr15:51989710..51992600-chr15:52007020..52010215,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000259296	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1017679	0.80[EUR][1000 genomes]
rs12901452	0.88[EUR][1000 genomes]
rs1378892	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1378893	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1378894	0.81[EUR][1000 genomes]
rs1378895	0.81[EUR][1000 genomes]
rs1456295	0.88[EUR][1000 genomes]
rs1456297	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1471072	0.80[EUR][1000 genomes]
rs1840707	0.88[EUR][1000 genomes]
rs2252220	0.81[EUR][1000 genomes]
rs2606134	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2606136	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2606137	0.88[EUR][1000 genomes]
rs2606138	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2606139	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2606141	0.82[EUR][1000 genomes]
rs2606143	0.81[EUR][1000 genomes]
rs2606145	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2606146	0.88[EUR][1000 genomes]
rs2607116	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2622768	0.87[EUR][1000 genomes]
rs2622769	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2622770	0.88[EUR][1000 genomes]
rs716986	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8025974	0.88[EUR][1000 genomes]
rs8027162	0.88[EUR][1000 genomes]
rs8029731	0.88[EUR][1000 genomes]
rs897581	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9672605	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471243	chr15:51345485-52018096	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv1035967	chr15:51949866-52008736	Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:51974200-52018800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:51974400-51990800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr15:51974400-52005200	Weak transcription	Brain Anterior Caudate	brain
4	chr15:51974600-51991000	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr15:51974600-52016400	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr15:51975000-51993200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr15:51975200-51998400	Weak transcription	Brain Angular Gyrus	brain
8	chr15:51975600-52017200	Weak transcription	Fetal Brain Male	brain
9	chr15:51978600-51990600	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr15:51982200-51996600	Strong transcription	Fetal Brain Female	brain
11	chr15:51983000-52013200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr15:51983400-51998400	Weak transcription	Brain Cingulate Gyrus	brain
13	chr15:51983800-51990200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr15:51984600-51991000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr15:51984600-51992600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr15:51984800-52018600	Weak transcription	Brain Hippocampus Middle	brain
17	chr15:51985400-51992000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr15:51986000-51998400	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr15:51986800-51990400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr15:51986800-51990800	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr15:51988600-51990400	Strong transcription	HUES48 Cell Line	embryonic stem cell
22	chr15:51989600-51990200	Enhancers	K562	blood
23	chr15:51989600-51993800	Strong transcription	Brain Germinal Matrix	brain
24	chr15:51990000-52016800	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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