Variant report

Variant	rs8025974
Chromosome Location	chr15:51985275-51985276
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:51984067..51985645-chr15:51997291..51999601,2	MCF-7	breast:
2	chr15:51984106..51987260-chr15:51989301..51991929,3	MCF-7	breast:
3	chr15:51985262..51987318-chr15:51998907..52000749,2	K562	blood:
4	chr15:51984640..51986605-chr15:51992060..51993889,2	K562	blood:
5	chr15:51983304..51986110-chr15:51988118..51990669,2	MCF-7	breast:
6	chr15:51975005..51977651-chr15:51984880..51987418,3	K562	blood:
7	chr15:51984283..51986352-chr15:51990636..51992962,2	K562	blood:

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs1017679	0.95[CEU][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10851501	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs11070861	0.89[EUR][1000 genomes]
rs12324531	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12441057	0.85[CEU][hapmap];0.89[EUR][1000 genomes]
rs12708427	0.95[CEU][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12901452	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12904173	0.90[CEU][hapmap];0.83[EUR][1000 genomes]
rs12904583	0.82[EUR][1000 genomes]
rs1378892	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1378893	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1378894	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1378895	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1456295	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1456297	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1471072	0.95[CEU][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1531157	0.88[EUR][1000 genomes]
rs17524750	0.82[EUR][1000 genomes]
rs17524906	0.95[CEU][hapmap];0.83[EUR][1000 genomes]
rs1840707	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1902595	0.95[CEU][hapmap];0.90[EUR][1000 genomes]
rs1902596	0.95[CEU][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2252220	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2414112	0.90[EUR][1000 genomes]
rs2606134	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2606136	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2606137	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2606138	0.95[CEU][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2606139	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2606141	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2606143	0.95[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2606145	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2606146	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2607110	0.85[EUR][1000 genomes]
rs2607112	0.90[EUR][1000 genomes]
rs2607116	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2607117	0.83[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2622768	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2622769	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2622770	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs28408214	0.86[EUR][1000 genomes]
rs34448759	0.82[EUR][1000 genomes]
rs34662965	0.80[EUR][1000 genomes]
rs34929849	0.81[EUR][1000 genomes]
rs35011964	0.83[EUR][1000 genomes]
rs4465557	0.86[EUR][1000 genomes]
rs4774594	0.85[EUR][1000 genomes]
rs4775954	0.95[CEU][hapmap];0.86[EUR][1000 genomes]
rs55725532	0.82[EUR][1000 genomes]
rs6493507	0.86[EUR][1000 genomes]
rs6493511	0.95[CEU][hapmap];0.90[EUR][1000 genomes]
rs6493512	0.95[CEU][hapmap];0.90[EUR][1000 genomes]
rs6493514	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs716986	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7180329	0.80[EUR][1000 genomes]
rs7181921	0.86[CEU][hapmap];1.00[CHB][hapmap];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs8027162	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8029731	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs897581	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs956171	0.95[CEU][hapmap];0.83[EUR][1000 genomes]
rs9672605	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9944266	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471243	chr15:51345485-52018096	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv1035967	chr15:51949866-52008736	Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:51974200-52018800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:51974400-51990800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr15:51974400-52005200	Weak transcription	Brain Anterior Caudate	brain
4	chr15:51974600-51991000	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr15:51974600-52016400	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr15:51975000-51993200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr15:51975200-51998400	Weak transcription	Brain Angular Gyrus	brain
8	chr15:51975600-52017200	Weak transcription	Fetal Brain Male	brain
9	chr15:51978600-51990600	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr15:51980200-51988000	Strong transcription	Brain Germinal Matrix	brain
11	chr15:51982200-51996600	Strong transcription	Fetal Brain Female	brain
12	chr15:51983000-52013200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr15:51983200-51985400	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr15:51983400-51998400	Weak transcription	Brain Cingulate Gyrus	brain
15	chr15:51983800-51990200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr15:51984000-51985400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
17	chr15:51984200-51985400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
18	chr15:51984400-51986000	Enhancers	Pancreatic Islets	Pancreatic Islet
19	chr15:51984400-51986800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
20	chr15:51984600-51986800	Strong transcription	HUES64 Cell Line	embryonic stem cell
21	chr15:51984600-51991000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr15:51984600-51992600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr15:51984800-52018600	Weak transcription	Brain Hippocampus Middle	brain
24	chr15:51985000-51986800	Enhancers	K562	blood

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