Variant report

Variant rs1531227
Chromosome Location chr12:688340-688341
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:64 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr12:682000-690600 Enhancers HepG2 liver
2 chr12:682000-692800 Weak transcription Gastric stomach
3 chr12:684600-689000 Enhancers Liver Liver
4 chr12:685800-688400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
5 chr12:685800-688400 Weak transcription Lung lung
6 chr12:685800-689800 Weak transcription Breast Myoepithelial Primary Cells Breast
7 chr12:685800-692200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
8 chr12:685800-692600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
9 chr12:685800-694400 Weak transcription Spleen Spleen
10 chr12:685800-700400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
11 chr12:686000-688400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
12 chr12:686000-692200 Weak transcription Pancreas Pancrea
13 chr12:686000-692600 Weak transcription Right Atrium heart
14 chr12:686000-694400 Weak transcription GM12878-XiMat blood
15 chr12:686000-695400 Weak transcription Esophagus oesophagus
16 chr12:686200-689800 Weak transcription Fetal Muscle Trunk muscle
17 chr12:686200-690800 Weak transcription Psoas Muscle Psoas
18 chr12:686200-694800 Weak transcription Stomach Mucosa stomach
19 chr12:686200-716200 Weak transcription Primary T regulatory cells fromperipheralblood blood
20 chr12:686600-689000 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
21 chr12:686600-700400 Weak transcription Primary neutrophils fromperipheralblood blood
22 chr12:687000-689400 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
23 chr12:687400-688400 Enhancers Adipose Nuclei Adipose
24 chr12:687400-688600 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
25 chr12:687400-688800 Enhancers Brain Anterior Caudate brain
26 chr12:687400-688800 Enhancers Brain Cingulate Gyrus brain
27 chr12:687400-688800 Enhancers Brain Substantia Nigra brain
28 chr12:687400-688800 Enhancers Left Ventricle heart
29 chr12:687400-689000 Enhancers HUES6 Cell Line embryonic stem cell
30 chr12:687400-689000 Enhancers Brain Inferior Temporal Lobe brain
31 chr12:687400-689000 Enhancers Placenta Placenta
32 chr12:687400-689000 Enhancers Fetal Stomach stomach
33 chr12:687400-689000 Enhancers Right Ventricle heart
34 chr12:687400-689200 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
35 chr12:687400-689200 Enhancers Brain Hippocampus Middle brain
36 chr12:687400-689200 Enhancers Skeletal Muscle Male skeletal muscle
37 chr12:687400-689400 Enhancers hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
38 chr12:687400-689400 Enhancers ES-UCSF4 Cell Line embryonic stem cell
39 chr12:687600-688600 Enhancers Fetal Thymus thymus
40 chr12:687600-688800 Enhancers Brain Angular Gyrus brain
41 chr12:687600-691600 Enhancers Fetal Heart heart
42 chr12:687800-688800 Enhancers Skeletal Muscle Female skeletal muscle
43 chr12:687800-689000 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
44 chr12:688000-688400 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
45 chr12:688000-688400 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
46 chr12:688000-688400 Enhancers Duodenum Smooth Muscle Duodenum
47 chr12:688000-688600 Enhancers ES-WA7 Cell Line embryonic stem cell
48 chr12:688000-688600 Enhancers Fetal Lung lung
49 chr12:688000-688600 Enhancers Placenta Amnion Placenta Amnion
50 chr12:688000-688600 Flanking Active TSS Hela-S3 cervix

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