Variant report

Variant rs2535425
Chromosome Location chr12:685878-685879
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:98 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr12:680200-686000 Enhancers Placenta Placenta
2 chr12:680800-688000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
3 chr12:681000-688000 Weak transcription Cortex derived primary cultured neurospheres brain
4 chr12:681600-687400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
5 chr12:682000-690600 Enhancers HepG2 liver
6 chr12:682000-692800 Weak transcription Gastric stomach
7 chr12:683400-686200 Enhancers Fetal Stomach stomach
8 chr12:683600-686000 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
9 chr12:683600-686000 Enhancers HMEC breast
10 chr12:683600-686400 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
11 chr12:683800-686000 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
12 chr12:683800-686000 Enhancers HSMM muscle
13 chr12:683800-686200 Enhancers K562 blood
14 chr12:684000-686400 Enhancers A549 lung
15 chr12:684200-686000 Enhancers Esophagus oesophagus
16 chr12:684200-686000 Enhancers Left Ventricle heart
17 chr12:684200-686000 Enhancers Placenta Amnion Placenta Amnion
18 chr12:684200-686200 Enhancers Primary hematopoietic stem cells short term culture blood
19 chr12:684200-686200 Enhancers Fetal Muscle Leg muscle
20 chr12:684400-686000 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
21 chr12:684400-686200 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
22 chr12:684400-686200 Enhancers Fetal Muscle Trunk muscle
23 chr12:684400-686200 Enhancers Right Ventricle heart
24 chr12:684600-686000 Enhancers Primary T helper naive cells fromperipheralblood blood
25 chr12:684600-686000 Enhancers Fetal Thymus thymus
26 chr12:684600-686200 Enhancers Primary hematopoietic stem cells blood
27 chr12:684600-686200 Enhancers Duodenum Smooth Muscle Duodenum
28 chr12:684600-686200 Enhancers Fetal Adrenal Gland Adrenal Gland
29 chr12:684600-686200 Enhancers Fetal Heart heart
30 chr12:684600-686400 Enhancers Brain Cingulate Gyrus brain
31 chr12:684600-686400 Enhancers Brain Substantia Nigra brain
32 chr12:684600-689000 Enhancers Liver Liver
33 chr12:684800-686000 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
34 chr12:684800-686000 Enhancers Primary T helper memory cells from peripheral blood 1 blood
35 chr12:684800-686000 Enhancers Primary T killer memory cells from peripheral blood blood
36 chr12:684800-686200 Enhancers Primary T helper memory cells from peripheral blood 2 blood
37 chr12:684800-686200 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
38 chr12:685000-686000 Bivalent Enhancer ES-I3 Cell Line embryonic stem cell
39 chr12:685000-686000 Enhancers Primary B cells from cord blood blood
40 chr12:685000-686000 Flanking Active TSS Skeletal Muscle Female skeletal muscle
41 chr12:685000-686000 Flanking Active TSS Stomach Smooth Muscle stomach
42 chr12:685000-686000 Enhancers GM12878-XiMat blood
43 chr12:685000-686000 Enhancers HUVEC blood vessel
44 chr12:685000-686400 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
45 chr12:685000-687800 Enhancers Primary monocytes fromperipheralblood blood
46 chr12:685200-686000 Bivalent Enhancer iPS-15b Cell Line embryonic stem cell
47 chr12:685200-686000 Bivalent Enhancer iPS-18 Cell Line embryonic stem cell
48 chr12:685200-686000 Flanking Active TSS Primary neutrophils fromperipheralblood blood
49 chr12:685200-686000 Flanking Active TSS Duodenum Mucosa Duodenum
50 chr12:685200-686000 Flanking Active TSS Monocytes-CD14+_RO01746 blood

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