Variant report
| Variant | rs1533985 |
|---|---|
| Chromosome Location | chr2:76419572-76419573 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10169075 | 1.00[AFR][1000 genomes] |
| rs10170747 | 1.00[AFR][1000 genomes] |
| rs12987628 | 1.00[AFR][1000 genomes] |
| rs1401837 | 1.00[AFR][1000 genomes] |
| rs1404085 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1404088 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1405339 | 1.00[AFR][1000 genomes] |
| rs1405341 | 1.00[AFR][1000 genomes] |
| rs1526642 | 1.00[AFR][1000 genomes] |
| rs1526646 | 1.00[CEU][hapmap] |
| rs1526648 | 1.00[CEU][hapmap];1.00[AFR][1000 genomes] |
| rs1526650 | 1.00[CEU][hapmap] |
| rs1554617 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1554618 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1609009 | 1.00[AFR][1000 genomes] |
| rs1660568 | 1.00[AFR][1000 genomes] |
| rs1949923 | 1.00[AFR][1000 genomes] |
| rs2901743 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs391688 | 1.00[AFR][1000 genomes] |
| rs393801 | 1.00[AFR][1000 genomes] |
| rs414148 | 1.00[AFR][1000 genomes] |
| rs7576329 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7589273 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv834265 | chr2:76275611-76450728 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv999645 | chr2:76317006-76451354 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv874311 | chr2:76389455-76492999 | Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:76419000-76419800 | Enhancers | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
| 2 | chr2:76419200-76420800 | Enhancers | HepG2 | liver |
