Variant report

Variant	rs414148
Chromosome Location	chr2:76311735-76311736
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:76307944..76309997-chr2:76310898..76313545,3	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10170802	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12473082	0.87[EUR][1000 genomes]
rs1404085	1.00[AFR][1000 genomes]
rs1404088	1.00[AFR][1000 genomes]
rs1524216	0.87[EUR][1000 genomes]
rs1526642	1.00[AFR][1000 genomes]
rs1526648	1.00[AFR][1000 genomes]
rs1533985	1.00[AFR][1000 genomes]
rs1554617	1.00[AFR][1000 genomes]
rs1554618	1.00[AFR][1000 genomes]
rs1608586	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1660568	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs1808871	0.80[AMR][1000 genomes]
rs2083550	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2901742	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2901743	1.00[AFR][1000 genomes]
rs317288	0.94[EUR][1000 genomes]
rs317290	0.82[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs390810	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs391322	0.84[ASN][1000 genomes]
rs391688	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs393801	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs395316	0.89[ASN][1000 genomes]
rs422744	0.89[ASN][1000 genomes]
rs425915	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs439012	0.89[ASN][1000 genomes]
rs449418	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4640412	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6753413	0.94[EUR][1000 genomes]
rs6759874	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7576329	1.00[AFR][1000 genomes]
rs7589273	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834265	chr2:76275611-76450728	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:76308000-76311800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr2:76311600-76312000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links