Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10170802	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes]
rs1524216	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1608586	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs1660568	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1808871	1.00[AFR][1000 genomes]
rs2083550	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs2901742	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs317288	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs317290	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs390810	0.90[EUR][1000 genomes]
rs391688	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs393801	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs414148	0.87[EUR][1000 genomes]
rs421370	0.91[ASN][1000 genomes]
rs425915	0.85[EUR][1000 genomes]
rs426141	0.91[ASN][1000 genomes]
rs449418	0.85[EUR][1000 genomes]
rs4640412	0.90[EUR][1000 genomes]
rs6753413	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6759874	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834265	chr2:76275611-76450728	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv999645	chr2:76317006-76451354	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12473082	FGD5	trans	lymphoblastoid	seeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:76382000-76382800	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr2:76382600-76383000	Enhancers	Breast Myoepithelial Primary Cells	Breast

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