Variant report

Variant	rs421370
Chromosome Location	chr2:76244062-76244063
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10170802	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs12473082	0.91[ASN][1000 genomes]
rs1524216	1.00[ASN][1000 genomes]
rs1660568	1.00[ASN][1000 genomes]
rs2901742	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs317288	1.00[ASN][1000 genomes]
rs317290	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap]
rs391322	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs391688	1.00[ASN][1000 genomes]
rs393801	1.00[ASN][1000 genomes]
rs395316	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs422744	0.94[EUR][1000 genomes]
rs426141	1.00[ASN][1000 genomes]
rs439012	0.94[EUR][1000 genomes]
rs6753413	1.00[ASN][1000 genomes]
rs6759874	1.00[CEU][hapmap];1.00[CHB][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs421370	FGD5	trans	lymphoblastoid	seeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:76243800-76244200	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr2:76243800-76244600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr2:76243800-76245200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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