Variant report

Variant	rs1808871
Chromosome Location	chr2:76357576-76357577
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10170802	0.88[AMR][1000 genomes]
rs12473082	1.00[AFR][1000 genomes]
rs1524216	1.00[AFR][1000 genomes]
rs1608586	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs2083550	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs2901742	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs317288	1.00[AFR][1000 genomes]
rs317290	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs390810	0.80[AMR][1000 genomes]
rs414148	0.80[AMR][1000 genomes]
rs4640412	0.88[AMR][1000 genomes]
rs6753413	1.00[AFR][1000 genomes]
rs6759874	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834265	chr2:76275611-76450728	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv999645	chr2:76317006-76451354	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:76356200-76358000	Enhancers	HepG2	liver
2	chr2:76356400-76358000	Enhancers	Fetal Intestine Large	intestine
3	chr2:76356400-76358200	Enhancers	Fetal Intestine Small	intestine
4	chr2:76357400-76357800	Enhancers	Pancreas	Pancrea
5	chr2:76357400-76358000	Enhancers	Duodenum Mucosa	Duodenum
6	chr2:76357400-76358000	Enhancers	Rectal Mucosa Donor 31	rectum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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