Variant report
| Variant | rs4640412 |
|---|---|
| Chromosome Location | chr2:76364514-76364515 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs10170802 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12473082 | 0.90[EUR][1000 genomes] |
| rs1524216 | 0.90[EUR][1000 genomes] |
| rs1608586 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1660568 | 0.94[EUR][1000 genomes] |
| rs1808871 | 0.88[AMR][1000 genomes] |
| rs2083550 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2901742 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs317288 | 0.97[EUR][1000 genomes] |
| rs317290 | 1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs390810 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs391322 | 0.84[ASN][1000 genomes] |
| rs391688 | 0.94[EUR][1000 genomes] |
| rs393801 | 0.94[EUR][1000 genomes] |
| rs395316 | 0.89[ASN][1000 genomes] |
| rs414148 | 0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs422744 | 0.89[ASN][1000 genomes] |
| rs425915 | 0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs439012 | 0.89[ASN][1000 genomes] |
| rs449418 | 0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs6753413 | 0.97[EUR][1000 genomes] |
| rs6759874 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv834265 | chr2:76275611-76450728 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv999645 | chr2:76317006-76451354 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | esv3349298 | chr2:76358346-76378794 | Enhancers | n/a | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:76364000-76364600 | Enhancers | Breast Myoepithelial Primary Cells | Breast |
