Variant report

Variant	rs1534293
Chromosome Location	chr4:28161145-28161146
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10000703	0.82[EUR][1000 genomes]
rs10025156	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13103623	0.81[EUR][1000 genomes]
rs4399978	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6448563	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6448565	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7671186	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7671258	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7672064	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7689940	0.87[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs7698878	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008691	chr4:28051516-28193042	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1005346	chr4:28120195-28161929	Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv998352	chr4:28120195-28162959	Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1012692	chr4:28122071-28165368	Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1002855	chr4:28141588-28240495	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv878774	chr4:28153349-28254938	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1005382	chr4:28157180-28403800	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:28161000-28161200	Enhancers	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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