Variant report

Variant	rs4399978
Chromosome Location	chr4:28175337-28175338
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10000703	0.82[EUR][1000 genomes]
rs10025156	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13103623	0.81[EUR][1000 genomes]
rs1534293	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6448563	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6448565	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7671186	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7671258	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7672064	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7689940	0.93[EUR][1000 genomes]
rs7698878	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008691	chr4:28051516-28193042	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1002855	chr4:28141588-28240495	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv878774	chr4:28153349-28254938	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1005382	chr4:28157180-28403800	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv878775	chr4:28163856-28473048	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:28169800-28176800	Weak transcription	A549	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links