Variant report

Variant	rs1534441
Chromosome Location	chr6:144944000-144944001
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:144934417..144936972-chr6:144942028..144944059,3	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs17073934	1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs17074024	1.00[AFR][1000 genomes]
rs1918750	1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs58567669	1.00[AFR][1000 genomes]
rs59451270	1.00[AFR][1000 genomes]
rs60715255	1.00[AFR][1000 genomes]
rs61418377	1.00[AFR][1000 genomes]
rs6902433	0.80[ASN][1000 genomes]
rs6923287	1.00[CHB][hapmap]
rs6942247	0.86[CHB][hapmap]
rs9373422	1.00[AFR][1000 genomes]
rs9376839	1.00[AFR][1000 genomes]
rs9386078	1.00[AFR][1000 genomes]
rs9390196	1.00[AFR][1000 genomes]
rs9399492	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015228	chr6:144780458-144989321	Strong transcription Enhancers ZNF genes & repeats Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv538462	chr6:144780458-144989321	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144908800-144947400	Weak transcription	HUVEC	blood vessel
2	chr6:144914800-144960000	Weak transcription	Lung	lung
3	chr6:144929600-144955200	Weak transcription	HepG2	liver
4	chr6:144929800-144945600	Weak transcription	Left Ventricle	heart
5	chr6:144930000-144945600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr6:144930000-144950200	Weak transcription	Primary T cells from cord blood	blood
7	chr6:144930400-144957600	Weak transcription	Primary hematopoietic stem cells	blood
8	chr6:144930600-144973000	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr6:144930800-144951800	Weak transcription	Primary B cells from peripheral blood	blood
10	chr6:144930800-144957800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr6:144931000-144958800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr6:144939000-144945600	Weak transcription	Pancreas	Pancrea
13	chr6:144939000-144949800	Weak transcription	Primary B cells from cord blood	blood
14	chr6:144939000-144959200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr6:144939200-144945800	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr6:144939400-144949400	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr6:144940600-144945800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr6:144941200-144945200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr6:144941200-144947200	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr6:144941400-144944000	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr6:144941400-144945400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr6:144941400-144951800	Weak transcription	Fetal Heart	heart
23	chr6:144943000-144947600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr6:144943600-144953800	Weak transcription	Gastric	stomach
25	chr6:144943800-144944200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr6:144943800-144944200	Enhancers	Primary monocytes fromperipheralblood	blood
27	chr6:144944000-144944200	Enhancers	Monocytes-CD14+_RO01746	blood
28	chr6:144944000-144944400	Enhancers	HUES48 Cell Line	embryonic stem cell

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