Variant report

Variant	rs17074024
Chromosome Location	chr6:144989447-144989448
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:144983668..144985899-chr6:144987093..144989829,3	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1534441	1.00[AFR][1000 genomes]
rs17073934	1.00[AFR][1000 genomes]
rs17074028	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1918750	1.00[AFR][1000 genomes]
rs58567669	1.00[AFR][1000 genomes]
rs59451270	1.00[AFR][1000 genomes]
rs60715255	1.00[AFR][1000 genomes]
rs61418377	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6919221	0.86[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs9373422	1.00[AFR][1000 genomes]
rs9376839	1.00[AFR][1000 genomes]
rs9386078	1.00[AFR][1000 genomes]
rs9390196	1.00[AFR][1000 genomes]
rs9399492	1.00[AFR][1000 genomes]
rs9497042	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv604822	chr6:144968195-145001887	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1032838	chr6:144978504-145110121	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144978800-144989800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
2	chr6:144981200-144996400	Weak transcription	Pancreas	Pancrea
3	chr6:144981200-145031000	Weak transcription	Placenta	Placenta
4	chr6:144982000-144996200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:144982600-144996200	Weak transcription	HSMM	muscle
6	chr6:144982800-144992200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr6:144982800-145010000	Weak transcription	Fetal Stomach	stomach
8	chr6:144983000-144992600	Weak transcription	HSMMtube	muscle
9	chr6:144983000-145024600	Weak transcription	Fetal Kidney	kidney
10	chr6:144984800-144996200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr6:144985000-144989800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
12	chr6:144985000-145004200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr6:144985200-144989800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr6:144985600-144989600	Enhancers	Primary T helper cells fromperipheralblood	blood
15	chr6:144986000-144990000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
16	chr6:144986200-145002000	Weak transcription	Small Intestine	intestine
17	chr6:144986800-144989600	Enhancers	Primary B cells from peripheral blood	blood
18	chr6:144987200-144990600	Weak transcription	Dnd41	blood
19	chr6:144987400-144990600	Weak transcription	Fetal Intestine Large	intestine
20	chr6:144987600-144991000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr6:144987800-144990800	Weak transcription	Primary T cells from cord blood	blood
22	chr6:144988600-144990800	Weak transcription	Primary T cells fromperipheralblood	blood
23	chr6:144988600-144992400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr6:144988600-144995800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr6:144988800-144990200	Enhancers	Primary monocytes fromperipheralblood	blood
26	chr6:144988800-144991000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr6:144988800-144991600	Weak transcription	Primary hematopoietic stem cells	blood
28	chr6:144989000-144991000	Weak transcription	Primary B cells from cord blood	blood
29	chr6:144989200-144989600	Enhancers	GM12878-XiMat	blood
30	chr6:144989200-144990000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr6:144989200-144991400	Weak transcription	Primary T helper cells PMA-I stimulated	--
32	chr6:144989400-144992600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr6:144989400-144992800	Weak transcription	Left Ventricle	heart

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