Variant report

Variant	rs6919221
Chromosome Location	chr6:144981057-144981058
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17074024	0.86[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs17074028	0.86[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs61418377	0.92[ASN][1000 genomes]
rs9484889	0.87[AMR][1000 genomes]
rs9497042	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015228	chr6:144780458-144989321	Strong transcription Enhancers ZNF genes & repeats Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv538462	chr6:144780458-144989321	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv604822	chr6:144968195-145001887	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1032838	chr6:144978504-145110121	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144965600-144982400	Weak transcription	HSMM	muscle
2	chr6:144967200-144982000	Weak transcription	HSMMtube	muscle
3	chr6:144968200-144982000	Weak transcription	Brain Germinal Matrix	brain
4	chr6:144977800-144985400	Weak transcription	Gastric	stomach
5	chr6:144978200-144981200	Enhancers	Dnd41	blood
6	chr6:144978400-144981200	Enhancers	HepG2	liver
7	chr6:144978400-144982400	Enhancers	Primary T helper naive cells from peripheral blood	blood
8	chr6:144978400-144983800	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr6:144978600-144982000	Enhancers	Primary B cells from peripheral blood	blood
10	chr6:144978600-144983000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr6:144978600-144983000	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr6:144978800-144981600	Enhancers	Primary B cells from cord blood	blood
13	chr6:144978800-144982000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr6:144978800-144988400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
15	chr6:144978800-144989800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
16	chr6:144979000-144981800	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr6:144979000-144981800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr6:144979000-144983000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr6:144979200-144981400	Weak transcription	HMEC	breast
20	chr6:144979200-144981800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr6:144979400-144981600	Weak transcription	NHEK	skin
22	chr6:144979400-144981800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr6:144979800-144981800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr6:144979800-144983600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr6:144979800-144985800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
26	chr6:144980000-144981200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr6:144980000-144981400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
28	chr6:144980000-144981400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
29	chr6:144980000-144981400	Enhancers	Primary T killer memory cells from peripheral blood	blood
30	chr6:144980000-144982000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
31	chr6:144980000-144982000	Enhancers	Adipose Nuclei	Adipose
32	chr6:144980000-144982200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr6:144980000-144983000	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
34	chr6:144980200-144981200	Enhancers	Muscle Satellite Cultured Cells	--
35	chr6:144980200-144981400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
36	chr6:144980200-144981600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr6:144980200-144981800	Enhancers	Sigmoid Colon	Sigmoid Colon
38	chr6:144980200-144981800	Enhancers	A549	lung
39	chr6:144980200-144982000	Enhancers	Ovary	ovary
40	chr6:144980200-144982200	Enhancers	NHDF-Ad	bronchial
41	chr6:144980200-144982600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr6:144980200-144982600	Enhancers	Fetal Thymus	thymus
43	chr6:144980200-144982600	Enhancers	Right Atrium	heart
44	chr6:144980200-144982800	Enhancers	Primary T cells fromperipheralblood	blood
45	chr6:144980200-144982800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
46	chr6:144980200-144982800	Enhancers	Osteobl	bone
47	chr6:144980200-144983000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
48	chr6:144980200-144983800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr6:144980400-144981200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr6:144980400-144981200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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