Variant report

Variant	rs1535338
Chromosome Location	chr14:24879818-24879819
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA1	chr14:24879699-24880097	PBDE	blood:	n/a	chr14:24879920-24879937
2	TAL1	chr14:24879731-24879999	K562	blood:	n/a	chr14:24879919-24879937

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:24873844..24880157-chr14:24897461..24902109,11	MCF-7	breast:
2	chr14:24833867..24840783-chr14:24879585..24886299,12	MCF-7	breast:
3	chr14:24879159..24881207-chr14:24897388..24899343,2	K562	blood:
4	chr14:24799755..24803080-chr14:24879329..24881532,3	MCF-7	breast:
5	chr14:24864677..24868980-chr14:24879607..24883296,4	MCF-7	breast:
6	chr14:24878984..24881300-chr14:24895106..24897138,3	MCF-7	breast:
7	chr14:24874656..24876611-chr14:24879616..24881482,2	K562	blood:
8	chr14:24834557..24836902-chr14:24877942..24881372,5	MCF-7	breast:
9	chr14:24879677..24881519-chr14:24885108..24887355,3	MCF-7	breast:

No data

Variant related genes	Relation type
NYNRIN	TF binding region
ENSG00000100968	Chromatin interaction
ENSG00000139899	Chromatin interaction
ENSG00000129467	Chromatin interaction
ENSG00000205978	Chromatin interaction
ENSG00000100441	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10146609	0.95[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs11627882	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3814811	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4982909	0.94[CHB][hapmap];0.83[JPT][hapmap];0.90[YRI][hapmap];0.90[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs6573793	1.00[CEU][hapmap];0.89[CHB][hapmap];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7151995	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:24869000-24883000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr14:24869400-24887800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr14:24869600-24885800	Weak transcription	Brain Angular Gyrus	brain
4	chr14:24869800-24882200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr14:24869800-24882800	Weak transcription	Fetal Heart	heart
6	chr14:24869800-24884800	Weak transcription	Brain Anterior Caudate	brain
7	chr14:24869800-24887600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr14:24870600-24880800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr14:24870800-24890600	Weak transcription	Primary hematopoietic stem cells	blood
10	chr14:24871800-24882200	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr14:24871800-24891600	Weak transcription	Fetal Thymus	thymus
12	chr14:24872000-24881200	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr14:24872600-24883800	Weak transcription	Brain Cingulate Gyrus	brain
14	chr14:24872800-24886200	Weak transcription	Pancreas	Pancrea
15	chr14:24873000-24887200	Weak transcription	NHEK	skin
16	chr14:24873200-24887800	Weak transcription	Osteobl	bone
17	chr14:24873400-24881600	Weak transcription	Fetal Kidney	kidney
18	chr14:24874000-24882200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr14:24874000-24882200	Weak transcription	Rectal Smooth Muscle	rectum
20	chr14:24874000-24882600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr14:24874000-24882800	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr14:24874000-24886400	Strong transcription	Fetal Intestine Large	intestine
23	chr14:24874000-24886600	Strong transcription	Fetal Intestine Small	intestine
24	chr14:24874000-24887200	Weak transcription	Right Atrium	heart
25	chr14:24874200-24881800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr14:24874200-24882200	Weak transcription	Left Ventricle	heart
27	chr14:24874200-24883800	Weak transcription	NHLF	lung
28	chr14:24874400-24885400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
29	chr14:24874400-24886800	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr14:24874400-24886800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr14:24874400-24887800	Weak transcription	NHDF-Ad	bronchial
32	chr14:24874600-24882600	Weak transcription	HUVEC	blood vessel
33	chr14:24875000-24883600	Strong transcription	Placenta Amnion	Placenta Amnion
34	chr14:24875600-24881800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr14:24875600-24885800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr14:24875800-24880600	Strong transcription	Spleen	Spleen
37	chr14:24875800-24881400	Strong transcription	Stomach Smooth Muscle	stomach
38	chr14:24875800-24885400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr14:24876200-24884600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
40	chr14:24876400-24883200	Weak transcription	Gastric	stomach
41	chr14:24876400-24886400	Weak transcription	Stomach Mucosa	stomach
42	chr14:24876600-24885000	Strong transcription	Right Ventricle	heart
43	chr14:24876800-24886000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr14:24877000-24880200	Strong transcription	Colon Smooth Muscle	Colon
45	chr14:24877000-24880600	Strong transcription	Aorta	Aorta
46	chr14:24877000-24880600	Strong transcription	Duodenum Mucosa	Duodenum
47	chr14:24877000-24881000	Strong transcription	Esophagus	oesophagus
48	chr14:24877000-24881200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr14:24877000-24884200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr14:24877000-24885400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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