Variant report

Variant	rs3814811
Chromosome Location	chr14:24887462-24887463
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:24845141..24847495-chr14:24885037..24887895,2	MCF-7	breast:
2	chr14:24886534..24888319-chr14:24890597..24892765,3	MCF-7	breast:
3	chr14:24885555..24887624-chr14:24899308..24902668,3	K562	blood:
4	chr14:24801896..24804817-chr14:24886439..24888195,2	MCF-7	breast:
5	chr14:24885943..24890700-chr14:24894774..24898947,5	K562	blood:

Variant related genes	Relation type
ENSG00000129467	Chromatin interaction
ENSG00000100968	Chromatin interaction
ENSG00000139899	Chromatin interaction
ENSG00000100441	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10146609	0.84[CHB][hapmap];0.91[JPT][hapmap];0.89[YRI][hapmap];0.83[ASN][1000 genomes]
rs11627882	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1535338	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4982909	0.84[CHB][hapmap];0.82[JPT][hapmap];0.90[YRI][hapmap];0.83[ASN][1000 genomes]
rs5247	1.00[MEX][hapmap]
rs6573793	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7151995	1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes]
rs8005307	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:24869400-24887800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr14:24869800-24887600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr14:24870800-24890600	Weak transcription	Primary hematopoietic stem cells	blood
4	chr14:24871800-24891600	Weak transcription	Fetal Thymus	thymus
5	chr14:24873200-24887800	Weak transcription	Osteobl	bone
6	chr14:24874400-24887800	Weak transcription	NHDF-Ad	bronchial
7	chr14:24880200-24887800	Weak transcription	Colon Smooth Muscle	Colon
8	chr14:24880200-24888000	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr14:24884000-24888200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr14:24884200-24887600	Weak transcription	Rectal Smooth Muscle	rectum
11	chr14:24884200-24894200	Weak transcription	Left Ventricle	heart
12	chr14:24884400-24887600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr14:24884600-24887600	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr14:24884600-24887600	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr14:24884600-24887600	Weak transcription	Duodenum Mucosa	Duodenum
16	chr14:24884600-24887800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr14:24884600-24888200	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr14:24884600-24889400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr14:24884600-24891800	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr14:24884800-24887600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr14:24885000-24887600	Weak transcription	Fetal Lung	lung
22	chr14:24885000-24887800	Weak transcription	Stomach Smooth Muscle	stomach
23	chr14:24885000-24888000	Weak transcription	Aorta	Aorta
24	chr14:24885200-24887600	Weak transcription	Placenta	Placenta
25	chr14:24885200-24887600	Weak transcription	Gastric	stomach
26	chr14:24885200-24897400	Weak transcription	Lung	lung
27	chr14:24885400-24887600	Weak transcription	Adipose Nuclei	Adipose
28	chr14:24885400-24887800	Weak transcription	Spleen	Spleen
29	chr14:24885600-24888200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr14:24885800-24891200	Weak transcription	K562	blood
31	chr14:24886000-24887600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr14:24886200-24888200	Weak transcription	Fetal Brain Female	brain
33	chr14:24886200-24889000	Enhancers	Pancreas	Pancrea
34	chr14:24886200-24889400	Weak transcription	Brain Germinal Matrix	brain
35	chr14:24886400-24887600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr14:24886400-24888000	Weak transcription	Fetal Intestine Large	intestine
37	chr14:24886400-24888000	Weak transcription	Fetal Stomach	stomach
38	chr14:24886400-24888800	Enhancers	Stomach Mucosa	stomach
39	chr14:24886600-24888000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr14:24886600-24889800	Weak transcription	Fetal Intestine Small	intestine
41	chr14:24886600-24894400	Weak transcription	Placenta Amnion	Placenta Amnion
42	chr14:24887000-24887600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr14:24887000-24888000	Enhancers	Fetal Muscle Leg	muscle
44	chr14:24887000-24888400	Enhancers	Liver	Liver
45	chr14:24887000-24888400	Enhancers	Esophagus	oesophagus
46	chr14:24887000-24888800	Enhancers	Ovary	ovary
47	chr14:24887000-24888800	Enhancers	HUVEC	blood vessel
48	chr14:24887200-24887600	Enhancers	Fetal Muscle Trunk	muscle
49	chr14:24887200-24887800	Enhancers	NHEK	skin
50	chr14:24887200-24888200	Enhancers	Right Atrium	heart

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