Variant report

Variant	rs1535990
Chromosome Location	chr13:96300494-96300495
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11070146	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11070147	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1408606	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2038782	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3742150	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4773921	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7329790	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7334692	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7338545	0.87[ASN][1000 genomes]
rs7986280	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7989079	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9525034	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900934	chr13:96255706-96327574	Strong transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96297800-96301200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr13:96297800-96301200	Weak transcription	Osteobl	bone

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links