Variant report

Variant	rs3742150
Chromosome Location	chr13:96285729-96285730
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11070146	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11070147	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1408606	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1535990	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17235320	0.89[ASN][1000 genomes]
rs2038782	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4773921	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7329790	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7334692	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7338545	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7986280	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7989079	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9525034	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900934	chr13:96255706-96327574	Strong transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv3330095	chr13:96281000-96297421	Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96247800-96293600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr13:96251400-96294400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr13:96256400-96295200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr13:96256800-96294200	Weak transcription	Placenta	Placenta
5	chr13:96260200-96293400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr13:96261200-96288400	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr13:96263600-96290000	Weak transcription	Adipose Nuclei	Adipose
8	chr13:96265800-96293400	Strong transcription	HUES64 Cell Line	embryonic stem cell
9	chr13:96266400-96286000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr13:96267600-96293000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr13:96268400-96286400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr13:96268400-96291600	Strong transcription	Osteobl	bone
13	chr13:96270200-96293400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
14	chr13:96272400-96292000	Weak transcription	Colonic Mucosa	Colon
15	chr13:96273000-96287400	Strong transcription	Fetal Lung	lung
16	chr13:96273600-96293400	Weak transcription	Brain Substantia Nigra	brain
17	chr13:96273600-96293600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr13:96273600-96293600	Weak transcription	Left Ventricle	heart
19	chr13:96273800-96293600	Weak transcription	Gastric	stomach
20	chr13:96273800-96293600	Weak transcription	Pancreas	Pancrea
21	chr13:96276800-96286800	Weak transcription	Fetal Intestine Small	intestine
22	chr13:96276800-96293400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr13:96278400-96285800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr13:96278800-96290000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr13:96279200-96286000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr13:96279200-96293800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
27	chr13:96279400-96285800	Strong transcription	Brain Inferior Temporal Lobe	brain
28	chr13:96279400-96292000	Strong transcription	HUES6 Cell Line	embryonic stem cell
29	chr13:96279400-96293800	Weak transcription	Liver	Liver
30	chr13:96279600-96286600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr13:96279600-96290200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
32	chr13:96279600-96292000	Strong transcription	Cortex derived primary cultured neurospheres	brain
33	chr13:96279800-96289400	Strong transcription	HSMM	muscle
34	chr13:96280000-96285800	Strong transcription	HUES48 Cell Line	embryonic stem cell
35	chr13:96280000-96288400	Strong transcription	Ovary	ovary
36	chr13:96280000-96289800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr13:96280200-96285800	Strong transcription	H1 Cell Line	embryonic stem cell
38	chr13:96280200-96286600	Strong transcription	Stomach Smooth Muscle	stomach
39	chr13:96280200-96288200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr13:96280200-96289800	Strong transcription	Fetal Muscle Leg	muscle
41	chr13:96280200-96290000	Strong transcription	Fetal Stomach	stomach
42	chr13:96280400-96285800	Strong transcription	Muscle Satellite Cultured Cells	--
43	chr13:96280400-96291600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr13:96280400-96291800	Strong transcription	Fetal Muscle Trunk	muscle
45	chr13:96280600-96286200	Strong transcription	Brain Germinal Matrix	brain
46	chr13:96280600-96288400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr13:96280600-96289400	Strong transcription	NH-A	brain
48	chr13:96280600-96292400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr13:96281000-96285800	Strong transcription	Fetal Brain Female	brain
50	chr13:96281000-96286800	Strong transcription	NHDF-Ad	bronchial

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