Variant report

Variant	rs1536114
Chromosome Location	chr1:67107406-67107407
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:67104788..67107666-chr1:67181908..67183681,2	K562	blood:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10443224	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11208915	0.81[EUR][1000 genomes]
rs11208923	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11208926	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11208931	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11208938	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12032485	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12032691	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12037314	0.80[EUR][1000 genomes]
rs12040170	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12044655	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12045543	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12048321	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12049347	0.81[EUR][1000 genomes]
rs12116888	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12120279	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12126819	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12127199	1.00[ASN][1000 genomes]
rs12127654	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12127884	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12129319	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12131306	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12135689	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12135797	0.81[EUR][1000 genomes]
rs12138066	1.00[ASN][1000 genomes]
rs12139975	0.82[EUR][1000 genomes]
rs12726588	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12729740	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12731043	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1570814	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17129280	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1998717	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1998718	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34007277	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35156185	0.81[EUR][1000 genomes]
rs35902414	0.83[EUR][1000 genomes]
rs4233317	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4428858	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4462119	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4655499	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4655500	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4655501	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4655502	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4655503	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4655637	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4655641	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4655644	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4655645	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4655649	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6680364	0.99[ASN][1000 genomes]
rs6696812	0.96[ASN][1000 genomes]
rs7546825	0.96[ASN][1000 genomes]
rs9787184	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869413	chr1:67082512-67414286	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:67088400-67114200	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr1:67090400-67155000	Weak transcription	Fetal Heart	heart
3	chr1:67090800-67108400	Weak transcription	Brain Anterior Caudate	brain
4	chr1:67091200-67108600	Weak transcription	Osteobl	bone
5	chr1:67091200-67108800	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr1:67091200-67128000	Weak transcription	NH-A	brain
7	chr1:67092000-67117200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr1:67092200-67114200	Weak transcription	Primary hematopoietic stem cells	blood
9	chr1:67093200-67107800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr1:67096200-67108200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr1:67098800-67108800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr1:67099400-67115600	Weak transcription	Fetal Lung	lung
13	chr1:67100000-67144400	Weak transcription	Left Ventricle	heart
14	chr1:67100400-67108600	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr1:67101000-67108800	Weak transcription	Brain Angular Gyrus	brain
16	chr1:67101200-67113600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr1:67101400-67110200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr1:67101600-67110800	Weak transcription	Aorta	Aorta
19	chr1:67102600-67108800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr1:67102800-67120200	Weak transcription	Brain Germinal Matrix	brain
21	chr1:67103200-67107800	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr1:67103200-67112200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr1:67106200-67143000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr1:67106800-67107800	Weak transcription	NHLF	lung
25	chr1:67106800-67115800	Weak transcription	Fetal Brain Male	brain
26	chr1:67107200-67112800	Weak transcription	Stomach Smooth Muscle	stomach
27	chr1:67107200-67114200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr1:67107400-67108000	Strong transcription	Fetal Brain Female	brain
29	chr1:67107400-67108200	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr1:67107400-67109200	Enhancers	NHDF-Ad	bronchial

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