Variant report

Variant	rs1536244
Chromosome Location	chr6:161392845-161392846
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1123179	0.96[ASN][1000 genomes]
rs1123180	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1123181	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12175972	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12661018	0.95[ASN][1000 genomes]
rs13193780	0.92[ASN][1000 genomes]
rs13195467	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1814458	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2099938	0.94[ASN][1000 genomes]
rs7760467	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9346843	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9347473	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9347474	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9347475	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9355323	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9355859	0.88[ASN][1000 genomes]
rs9355860	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9364582	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9364583	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9365237	0.89[ASN][1000 genomes]
rs9365238	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9365239	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422347	chr6:161211171-161442377	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1030045	chr6:161359075-161562255	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv886817	chr6:161371621-161846654	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	esv3381361	chr6:161373617-161864101	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv1023982	chr6:161382188-161549831	Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:161372800-161394000	Weak transcription	Right Atrium	heart
2	chr6:161390800-161394200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr6:161391000-161393400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr6:161392000-161393200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr6:161392200-161394400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:161392200-161394400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr6:161392200-161394400	Enhancers	NHDF-Ad	bronchial
8	chr6:161392200-161396400	Enhancers	HSMM	muscle
9	chr6:161392400-161394400	Weak transcription	Pancreas	Pancrea
10	chr6:161392400-161396400	Enhancers	Muscle Satellite Cultured Cells	--
11	chr6:161392600-161393600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr6:161392600-161394000	Enhancers	Osteobl	bone
13	chr6:161392600-161395000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr6:161392600-161395800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr6:161392600-161396000	Enhancers	NH-A	brain
16	chr6:161392600-161396200	Enhancers	NHEK	skin
17	chr6:161392600-161396400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr6:161392800-161393600	Enhancers	HSMMtube	muscle
19	chr6:161392800-161396400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr6:161392800-161396400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr6:161392800-161396600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr6:161392800-161396600	Enhancers	HMEC	breast

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