Variant report

Variant	rs9364583
Chromosome Location	chr6:161401634-161401635
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:161400509..161403835-chr6:161411680..161413410,3	K562	blood:
2	chr6:161400783..161404056-chr6:161411481..161414917,3	K562	blood:
3	chr6:161400759..161402331-chr6:161411428..161412983,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000272841	Chromatin interaction
ENSG00000085511	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1123179	0.97[ASN][1000 genomes]
rs1123180	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1123181	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12175972	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12661018	0.89[ASN][1000 genomes]
rs13193780	0.86[ASN][1000 genomes]
rs13195467	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1536244	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1814458	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2099938	0.88[ASN][1000 genomes]
rs7760467	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9346843	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9347473	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9347474	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9347475	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9355323	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9355859	0.83[ASN][1000 genomes]
rs9355860	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9364582	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9365237	0.83[ASN][1000 genomes]
rs9365238	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9365239	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422347	chr6:161211171-161442377	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1030045	chr6:161359075-161562255	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv886817	chr6:161371621-161846654	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	esv3381361	chr6:161373617-161864101	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv1023982	chr6:161382188-161549831	Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:161397400-161406800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr6:161399400-161404200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:161399800-161404000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr6:161401000-161402200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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