Variant report

Variant	rs1537274
Chromosome Location	chr9:21455053-21455054
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-IFNE-1	chr9:21454267-21455943	NONHSAT130385
2	lnc-IFNE-1	chr9:21454267-21455943	NONHSAT130386

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10491568	1.00[AFR][1000 genomes]
rs10965018	0.92[AFR][1000 genomes]
rs16938419	1.00[AFR][1000 genomes]
rs16938424	1.00[AFR][1000 genomes]
rs16938425	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892724	chr9:20690244-21517302	Genic enhancers Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	153 gene(s)	inside rSNPs	diseases
2	esv2752289	chr9:21361957-21499624	Weak transcription Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv466297	chr9:21391698-21507589	Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv613758	chr9:21391698-21507589	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv892739	chr9:21407250-21470520	Weak transcription Bivalent Enhancer ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21448400-21455400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr9:21451400-21458800	Weak transcription	A549	lung
3	chr9:21451800-21457600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr9:21452400-21455600	Weak transcription	NHLF	lung
5	chr9:21453200-21456200	Strong transcription	NH-A	brain
6	chr9:21453400-21455200	Enhancers	NHDF-Ad	bronchial
7	chr9:21453600-21455400	Genic enhancers	HMEC	breast
8	chr9:21453800-21455200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr9:21453800-21455200	Enhancers	NHEK	skin
10	chr9:21453800-21455200	Genic enhancers	Osteobl	bone
11	chr9:21453800-21455400	Genic enhancers	Muscle Satellite Cultured Cells	--
12	chr9:21453800-21455800	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr9:21453800-21456000	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr9:21454000-21455200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr9:21454200-21455200	Enhancers	HSMM	muscle
16	chr9:21454400-21456200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr9:21454800-21474400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr9:21454800-21481600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr9:21455000-21455200	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr9:21455000-21455800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr9:21455000-21456800	Weak transcription	Hela-S3	cervix
22	chr9:21455000-21457200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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