Variant report

Variant	rs1537461
Chromosome Location	chr13:52044194-52044195
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12853862	1.00[CEU][hapmap];0.81[JPT][hapmap];0.89[AMR][1000 genomes]
rs9535656	0.83[MEX][hapmap]
rs9535676	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1537461	INTS6	Cis_1M	lymphoblastoid	RTeQTL
rs1537461	ST13P4	cis	parietal	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:52031000-52044800	Weak transcription	Liver	Liver
2	chr13:52031800-52045400	Weak transcription	Primary B cells from cord blood	blood
3	chr13:52040400-52045000	Weak transcription	HepG2	liver
4	chr13:52041800-52052600	Weak transcription	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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