Variant report

Variant	rs9535656
Chromosome Location	chr13:51971482-51971483
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:51970484..51973482-chr13:52022310..52025240,2	K562	blood:
2	chr13:51966813..51968638-chr13:51968842..51971836,2	K562	blood:
3	chr13:51971225..51973020-chr13:51976171..51978919,2	MCF-7	breast:
4	chr13:51970051..51972806-chr13:52025800..52028354,2	MCF-7	breast:
5	chr13:51970413..51974561-chr13:52025794..52028654,4	K562	blood:
6	chr13:51970247..51972973-chr13:51973755..51976105,2	K562	blood:

Variant related genes	Relation type
ENSG00000224892	Chromatin interaction
ENSG00000236778	Chromatin interaction
ENSG00000102786	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12428053	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs1537461	0.83[MEX][hapmap]
rs17194999	0.87[CEU][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6561638	1.00[MKK][hapmap]
rs9535651	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9535654	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9535675	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51945200-51971600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr13:51945800-52016600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr13:51946200-51988000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr13:51946400-51971600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr13:51948600-51971600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr13:51948600-51971600	Weak transcription	Small Intestine	intestine
7	chr13:51949400-52025000	Weak transcription	Fetal Muscle Leg	muscle
8	chr13:51950000-51971800	Weak transcription	Lung	lung
9	chr13:51950000-52025200	Weak transcription	Fetal Muscle Trunk	muscle
10	chr13:51950200-51999800	Weak transcription	Brain Germinal Matrix	brain
11	chr13:51955200-51973600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr13:51957400-51978200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr13:51957800-51971600	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr13:51957800-51978400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr13:51957800-51986600	Weak transcription	Fetal Thymus	thymus
16	chr13:51958000-51971600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr13:51958000-51971600	Weak transcription	Duodenum Mucosa	Duodenum
18	chr13:51958000-51996800	Weak transcription	Thymus	Thymus
19	chr13:51958200-51990000	Weak transcription	HMEC	breast
20	chr13:51958400-51987800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr13:51959200-51981200	Weak transcription	Primary B cells from peripheral blood	blood
22	chr13:51959800-51971600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr13:51959800-51989400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr13:51960000-51973400	Weak transcription	Primary T helper cells fromperipheralblood	blood
25	chr13:51962000-51976200	Weak transcription	Dnd41	blood
26	chr13:51962200-51979400	Weak transcription	HUVEC	blood vessel
27	chr13:51962200-51989600	Weak transcription	Primary T cells fromperipheralblood	blood
28	chr13:51962200-51993200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr13:51963200-52024800	Weak transcription	Fetal Intestine Large	intestine
30	chr13:51963400-51971600	Weak transcription	Primary T cells from cord blood	blood
31	chr13:51963600-51989800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr13:51963600-52003600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr13:51964400-51971600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
34	chr13:51966800-51971600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr13:51966800-51971600	Weak transcription	Right Ventricle	heart
36	chr13:51966800-51973600	Weak transcription	Primary B cells from cord blood	blood
37	chr13:51967600-51971600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr13:51967800-51971600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr13:51967800-51972000	Enhancers	Pancreatic Islets	Pancreatic Islet
40	chr13:51968000-51973200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
41	chr13:51968200-51989800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr13:51969200-51971600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr13:51969400-51973200	Weak transcription	HSMM	muscle
44	chr13:51969600-51971600	Weak transcription	Primary T helper cells PMA-I stimulated	--
45	chr13:51969600-51995000	Weak transcription	Rectal Mucosa Donor 29	rectum
46	chr13:51969800-51971600	Weak transcription	NH-A	brain
47	chr13:51969800-51971600	Weak transcription	NHEK	skin
48	chr13:51970000-51971600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr13:51970400-51972400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr13:51970600-51972000	Enhancers	Primary neutrophils fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links