Variant report

Variant	rs1538288
Chromosome Location	chr1:211284011-211284012
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1338352	0.84[EUR][1000 genomes]
rs1338354	0.84[EUR][1000 genomes]
rs1338355	0.84[EUR][1000 genomes]
rs1416066	0.84[EUR][1000 genomes]
rs1577986	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2066025	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2211040	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3111222	0.83[EUR][1000 genomes]
rs3811393	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4951505	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6665927	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7532201	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7548416	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3389740	chr1:211283829-211286827	Genic enhancers Strong transcription Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211256400-211285400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:211271400-211286000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr1:211280800-211290800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr1:211280800-211300200	Weak transcription	HSMMtube	muscle
5	chr1:211282400-211286400	Weak transcription	HSMM	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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