Variant report

Variant	rs153829
Chromosome Location	chr5:14645228-14645229
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs13189930	0.87[JPT][hapmap]
rs149181	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs149617	0.93[JPT][hapmap]
rs152788	1.00[JPT][hapmap]
rs153830	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs166127	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16903642	1.00[YRI][hapmap]
rs16903653	1.00[YRI][hapmap]
rs183681	0.88[ASN][1000 genomes]
rs1875513	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs2455402	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs250435	0.89[ASN][1000 genomes]
rs250440	0.93[JPT][hapmap]
rs250862	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs251496	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs258290	0.87[JPT][hapmap]
rs258374	0.94[JPT][hapmap]
rs25945	0.92[CHB][hapmap];0.93[JPT][hapmap];0.86[ASN][1000 genomes]
rs25951	0.91[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs25952	0.91[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs25983	0.82[JPT][hapmap]
rs25986	0.82[CHB][hapmap];0.93[JPT][hapmap];0.80[ASN][1000 genomes]
rs25987	0.82[CHB][hapmap];0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs25988	0.82[CHB][hapmap];0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs25992	0.82[CHB][hapmap];0.93[JPT][hapmap];0.86[ASN][1000 genomes]
rs26307	1.00[JPT][hapmap]
rs27356	0.87[JPT][hapmap]
rs27882	0.86[ASN][1000 genomes]
rs27911	0.82[CHB][hapmap];0.93[JPT][hapmap];0.86[ASN][1000 genomes]
rs28004	0.92[CHB][hapmap];0.93[JPT][hapmap];0.86[ASN][1000 genomes]
rs31919	0.87[ASN][1000 genomes]
rs31920	0.82[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs31921	0.86[ASN][1000 genomes]
rs31922	0.93[JPT][hapmap]
rs31923	0.82[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs31925	1.00[JPT][hapmap]
rs31926	0.92[CHB][hapmap];0.93[JPT][hapmap];0.86[ASN][1000 genomes]
rs31928	0.91[CHB][hapmap];0.93[JPT][hapmap];0.86[ASN][1000 genomes]
rs31929	0.91[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs31930	0.92[CHB][hapmap];0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs31968	1.00[JPT][hapmap]
rs3853119	0.83[ASN][1000 genomes]
rs3866215	0.82[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs40578	0.87[ASN][1000 genomes]
rs42358	0.92[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs42410	0.86[ASN][1000 genomes]
rs42681	0.92[CHB][hapmap];0.92[JPT][hapmap];0.87[ASN][1000 genomes]
rs456180	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs459467	0.86[ASN][1000 genomes]
rs466880	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs4702043	1.00[JPT][hapmap]
rs6554856	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs6872954	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs6879028	1.00[YRI][hapmap]
rs745328	0.87[JPT][hapmap]
rs95492	0.92[CHB][hapmap];0.93[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026914	chr5:14237782-14751588	Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv1018187	chr5:14385164-15127103	Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv830211	chr5:14474675-14675776	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv1032951	chr5:14529579-14667342	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:14644800-14645400	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr5:14644800-14646000	Enhancers	iPS-18 Cell Line	embryonic stem cell

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