Variant report

Variant	rs3866215
Chromosome Location	chr5:14648867-14648868
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:14398708..14399914-chr5:14648355..14649288,5	MCF-7	breast:
2	chr5:13976771..13977506-chr5:14648421..14648943,2	MCF-7	breast:
3	chr5:14352118..14352949-chr5:14648765..14649375,3	K562	blood:
4	chr5:14366799..14367387-chr5:14648407..14648919,2	K562	blood:
5	chr5:14352294..14352920-chr5:14648683..14649276,2	MCF-7	breast:
6	chr5:14108776..14109307-chr5:14648451..14649059,2	K562	blood:
7	chr5:14364046..14364977-chr5:14648428..14649312,3	K562	blood:
8	chr5:13987663..13988894-chr5:14648405..14649724,6	K562	blood:
9	chr5:14405228..14405866-chr5:14648409..14649049,2	MCF-7	breast:
10	chr5:14363978..14364976-chr5:14648837..14649345,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000038382	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs149493	0.90[ASN][1000 genomes]
rs149617	0.91[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs152788	0.90[CHB][hapmap];0.85[JPT][hapmap];0.89[ASN][1000 genomes]
rs153829	0.82[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs153830	0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs166127	0.83[ASN][1000 genomes]
rs1875513	1.00[CHB][hapmap];0.85[JPT][hapmap];0.95[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2455402	0.84[JPT][hapmap]
rs250439	0.90[ASN][1000 genomes]
rs250440	0.91[CHB][hapmap];0.86[JPT][hapmap];0.91[YRI][hapmap];0.84[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs250862	0.81[ASN][1000 genomes]
rs251496	0.82[ASN][1000 genomes]
rs258290	0.82[CHB][hapmap];0.87[YRI][hapmap];0.88[ASN][1000 genomes]
rs258374	0.91[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs25945	0.86[JPT][hapmap]
rs25951	0.85[JPT][hapmap]
rs25952	0.85[JPT][hapmap]
rs26307	0.90[CHB][hapmap];0.85[JPT][hapmap];0.89[ASN][1000 genomes]
rs28004	0.86[JPT][hapmap]
rs31920	0.85[JPT][hapmap]
rs31922	0.82[CHB][hapmap];0.86[JPT][hapmap];0.91[ASN][1000 genomes]
rs31923	0.85[JPT][hapmap]
rs31925	0.90[CHB][hapmap];0.85[JPT][hapmap];0.89[ASN][1000 genomes]
rs31926	0.86[JPT][hapmap]
rs31928	0.85[JPT][hapmap]
rs31929	0.85[JPT][hapmap]
rs31930	0.93[JPT][hapmap]
rs31968	0.90[CHB][hapmap];0.85[JPT][hapmap];0.89[YRI][hapmap];0.88[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs3853119	0.96[ASN][1000 genomes]
rs42358	0.86[JPT][hapmap]
rs42681	0.92[JPT][hapmap]
rs456180	0.81[CHB][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs459467	0.81[ASN][1000 genomes]
rs466880	0.82[CHB][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs4702043	0.90[CHB][hapmap];0.85[JPT][hapmap];0.87[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs6554855	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6554856	0.82[CHB][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs6872954	1.00[CHB][hapmap];0.86[JPT][hapmap];0.92[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs95492	0.80[JPT][hapmap];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026914	chr5:14237782-14751588	Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv1018187	chr5:14385164-15127103	Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv830211	chr5:14474675-14675776	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv1032951	chr5:14529579-14667342	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
5	esv3450688	chr5:14647077-14649300	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3866215	FAM105B	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:14647600-14649200	Enhancers	NHLF	lung
2	chr5:14648600-14649000	Enhancers	Primary T helper cells PMA-I stimulated	--
3	chr5:14648800-14650000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr5:14648800-14655200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

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