Variant report

Variant	rs1538853
Chromosome Location	chr13:51697806-51697807
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11618218	0.94[CHB][hapmap];0.89[GIH][hapmap]
rs12184541	0.82[EUR][1000 genomes]
rs61956844	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832610	chr13:51636661-51822106	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1538853	RNASEH2B	cis	parietal	SCAN

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51693200-51700800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr13:51696600-51700200	Enhancers	Liver	Liver
3	chr13:51696800-51700000	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr13:51696800-51700400	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr13:51697000-51700000	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr13:51697000-51700400	Enhancers	H1 Cell Line	embryonic stem cell
7	chr13:51697000-51700400	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr13:51697000-51700400	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr13:51697200-51700400	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr13:51697400-51698000	Bivalent Enhancer	HepG2	liver
11	chr13:51697400-51698400	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr13:51697400-51698400	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr13:51697400-51699400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr13:51697800-51698600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr13:51697800-51698600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr13:51697800-51699800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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