Variant report

Variant	rs61956844
Chromosome Location	chr13:51695932-51695933
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11618218	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1538853	0.86[ASN][1000 genomes]
rs17664224	0.87[ASN][1000 genomes]
rs2408218	0.87[ASN][1000 genomes]
rs4942948	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832610	chr13:51636661-51822106	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51690000-51697000	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr13:51691800-51697400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr13:51692600-51697000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr13:51692600-51697200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr13:51693200-51697200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr13:51693200-51700800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr13:51693800-51697000	Weak transcription	Pancreas	Pancrea
8	chr13:51695600-51696800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr13:51695600-51697000	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr13:51695800-51696800	Weak transcription	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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