Variant report

Variant	rs1540152
Chromosome Location	chr11:15220404-15220405
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10500808	1.00[CEU][hapmap]
rs10500809	1.00[CEU][hapmap]
rs10500810	1.00[CEU][hapmap]
rs16931216	1.00[CEU][hapmap]
rs16931218	1.00[CEU][hapmap]
rs16931247	1.00[CEU][hapmap]
rs17413754	1.00[JPT][hapmap]
rs1792542	1.00[JPT][hapmap]
rs6486229	1.00[CEU][hapmap]
rs7109292	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038154	chr11:14991411-15246500	Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv540950	chr11:14991411-15246500	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv897007	chr11:14991411-15260124	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv530217	chr11:14991411-15275034	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv2830370	chr11:15142247-15444094	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv897010	chr11:15219258-15279421	Weak transcription Strong transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15197800-15221000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:15210000-15220600	Weak transcription	Aorta	Aorta
3	chr11:15212200-15220800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr11:15215800-15222000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr11:15215800-15222000	Enhancers	NHDF-Ad	bronchial
6	chr11:15215800-15222000	Enhancers	Osteobl	bone
7	chr11:15216200-15222200	Enhancers	Muscle Satellite Cultured Cells	--
8	chr11:15216600-15222000	Enhancers	Colon Smooth Muscle	Colon
9	chr11:15217200-15222600	Enhancers	Liver	Liver
10	chr11:15217400-15220800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr11:15218000-15222000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr11:15218600-15221200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr11:15218600-15229400	Weak transcription	Gastric	stomach
14	chr11:15218800-15222600	Enhancers	Fetal Brain Male	brain
15	chr11:15219000-15220600	Enhancers	Fetal Lung	lung
16	chr11:15219200-15221000	Weak transcription	Pancreas	Pancrea
17	chr11:15219200-15221800	Enhancers	Stomach Smooth Muscle	stomach
18	chr11:15219200-15234600	Weak transcription	Fetal Intestine Small	intestine
19	chr11:15219400-15220800	Enhancers	Fetal Brain Female	brain
20	chr11:15219400-15223000	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr11:15219400-15223200	Enhancers	Skeletal Muscle Female	skeletal muscle
22	chr11:15219600-15221400	Enhancers	Rectal Smooth Muscle	rectum
23	chr11:15219800-15222400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr11:15220000-15221000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr11:15220000-15221000	Weak transcription	Brain Germinal Matrix	brain
26	chr11:15220000-15221200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr11:15220000-15221200	Weak transcription	HSMMtube	muscle
28	chr11:15220000-15221800	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr11:15220200-15220600	Weak transcription	Fetal Muscle Leg	muscle
30	chr11:15220200-15222600	Weak transcription	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links