Variant report

Variant	rs17413754
Chromosome Location	chr11:15171855-15171856
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11023453	0.82[CHB][hapmap];0.93[CHD][hapmap];0.85[GIH][hapmap]
rs1540152	1.00[JPT][hapmap]
rs17413538	0.82[CHB][hapmap];0.93[CHD][hapmap];0.83[GIH][hapmap]
rs1792542	1.00[JPT][hapmap]
rs34251262	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7109292	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530497	chr11:14641440-15200572	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv1038154	chr11:14991411-15246500	Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv540950	chr11:14991411-15246500	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv897007	chr11:14991411-15260124	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv530217	chr11:14991411-15275034	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	esv2830370	chr11:15142247-15444094	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	nsv897009	chr11:15166201-15181614	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15161600-15172600	Weak transcription	Pancreas	Pancrea
2	chr11:15167200-15182800	Weak transcription	Fetal Intestine Small	intestine
3	chr11:15167800-15180000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr11:15168400-15174200	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr11:15169000-15178400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr11:15169800-15172600	Weak transcription	Aorta	Aorta
7	chr11:15170000-15175000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr11:15170200-15178400	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr11:15170400-15172000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr11:15170400-15178600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr11:15170600-15174800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr11:15171400-15172400	Enhancers	Brain Germinal Matrix	brain
13	chr11:15171600-15172200	Enhancers	Brain Cingulate Gyrus	brain
14	chr11:15171600-15172400	Enhancers	Brain Anterior Caudate	brain
15	chr11:15171600-15172400	Enhancers	Brain Substantia Nigra	brain
16	chr11:15171600-15173400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
17	chr11:15171600-15173800	Enhancers	Primary B cells from peripheral blood	blood
18	chr11:15171800-15172200	Enhancers	Brain Inferior Temporal Lobe	brain
19	chr11:15171800-15173400	Enhancers	Primary B cells from cord blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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